miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33515 5' -64.6 NC_007605.1 + 163041 0.65 0.593195
Target:  5'- gUCCccaGGCCGUGGGUcauguagaaacUGuuaaagagacucuCCUUGCCCu -3'
miRNA:   3'- -AGGcg-CCGGCACCCG-----------ACu------------GGGACGGG- -5'
33515 5' -64.6 NC_007605.1 + 42327 0.66 0.588442
Target:  5'- gUUGCGGCUGaacgugacuacccagGGGCccaACCUUGCCCu -3'
miRNA:   3'- aGGCGCCGGCa--------------CCCGac-UGGGACGGG- -5'
33515 5' -64.6 NC_007605.1 + 119671 0.66 0.587492
Target:  5'- --gGCGGCCGUGgcGGC-GGCCUUccucggucgGCCCc -3'
miRNA:   3'- aggCGCCGGCAC--CCGaCUGGGA---------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 60810 0.66 0.587492
Target:  5'- gCCaCGGCCGaggaUGGGCagGACaagGCCCu -3'
miRNA:   3'- aGGcGCCGGC----ACCCGa-CUGggaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 154836 0.66 0.57801
Target:  5'- -aUGCGGaCCuUGGuGUUGGCCCgcaagaagcccuUGCCCg -3'
miRNA:   3'- agGCGCC-GGcACC-CGACUGGG------------ACGGG- -5'
33515 5' -64.6 NC_007605.1 + 50670 0.66 0.572336
Target:  5'- cCCGaCGGCCGUGGGgaGGCggguggcggaggGCCg -3'
miRNA:   3'- aGGC-GCCGGCACCCgaCUGgga---------CGGg -5'
33515 5' -64.6 NC_007605.1 + 109102 0.66 0.568561
Target:  5'- --gGCGGCCcUGGacguGCUGGCauccucaCUGCCCc -3'
miRNA:   3'- aggCGCCGGcACC----CGACUGg------GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 14190 0.66 0.568561
Target:  5'- aUCCGCGGcCCGcGGGagcACCCccGCCg -3'
miRNA:   3'- -AGGCGCC-GGCaCCCgacUGGGa-CGGg -5'
33515 5' -64.6 NC_007605.1 + 62918 0.66 0.568561
Target:  5'- gUCUGCaacGCCGaaucgcgGGGCUGcuGCCCccuccgGCCCg -3'
miRNA:   3'- -AGGCGc--CGGCa------CCCGAC--UGGGa-----CGGG- -5'
33515 5' -64.6 NC_007605.1 + 135171 0.66 0.568561
Target:  5'- aCCGUGaGCgGUuaccgGGGCgcagGGCCuCUGCCg -3'
miRNA:   3'- aGGCGC-CGgCA-----CCCGa---CUGG-GACGGg -5'
33515 5' -64.6 NC_007605.1 + 78372 0.66 0.568561
Target:  5'- aUCCGCGGUggauacaGUGGGgcCUGugCUUGCa- -3'
miRNA:   3'- -AGGCGCCGg------CACCC--GACugGGACGgg -5'
33515 5' -64.6 NC_007605.1 + 83128 0.66 0.568561
Target:  5'- cUCUGCGGCCaGUGaGGaUGAUCCUcaaucuggGCCa -3'
miRNA:   3'- -AGGCGCCGG-CAC-CCgACUGGGA--------CGGg -5'
33515 5' -64.6 NC_007605.1 + 122510 0.66 0.559151
Target:  5'- aUgGUGGCUGaaGGCUGGCCCguuguagGCCa -3'
miRNA:   3'- aGgCGCCGGCacCCGACUGGGa------CGGg -5'
33515 5' -64.6 NC_007605.1 + 137409 0.66 0.559151
Target:  5'- -gCGgGGCCGgucggcucGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac------CCGACUGGgaC-GGG- -5'
33515 5' -64.6 NC_007605.1 + 155822 0.66 0.559151
Target:  5'- -gCGgGGCCGgucggcucGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac------CCGACUGGgaC-GGG- -5'
33515 5' -64.6 NC_007605.1 + 143547 0.66 0.559151
Target:  5'- -gCGgGGCCGgucggcucGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac------CCGACUGGgaC-GGG- -5'
33515 5' -64.6 NC_007605.1 + 140478 0.66 0.559151
Target:  5'- -gCGgGGCCGgucggcucGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac------CCGACUGGgaC-GGG- -5'
33515 5' -64.6 NC_007605.1 + 5660 0.66 0.559151
Target:  5'- aUCC-CcGCCG-GGGCUaggggGACCCgcGCCCa -3'
miRNA:   3'- -AGGcGcCGGCaCCCGA-----CUGGGa-CGGG- -5'
33515 5' -64.6 NC_007605.1 + 158891 0.66 0.559151
Target:  5'- -gCGgGGCCGgucggcucGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac------CCGACUGGgaC-GGG- -5'
33515 5' -64.6 NC_007605.1 + 152753 0.66 0.559151
Target:  5'- -gCGgGGCCGgucggcucGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac------CCGACUGGgaC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.