miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33515 5' -64.6 NC_007605.1 + 137409 0.66 0.559151
Target:  5'- -gCGgGGCCGgucggcucGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac------CCGACUGGgaC-GGG- -5'
33515 5' -64.6 NC_007605.1 + 47354 0.66 0.549785
Target:  5'- --aGCGGCCGUguccGGGgaGAgCgUGCUCa -3'
miRNA:   3'- aggCGCCGGCA----CCCgaCUgGgACGGG- -5'
33515 5' -64.6 NC_007605.1 + 15347 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 33761 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 18416 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 27623 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 24554 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 12278 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 21485 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 30692 0.66 0.549785
Target:  5'- cCCGCGGCCauUGGGCccagauugagaGACCaguccagggGCCCg -3'
miRNA:   3'- aGGCGCCGGc-ACCCGa----------CUGGga-------CGGG- -5'
33515 5' -64.6 NC_007605.1 + 111336 0.66 0.540469
Target:  5'- gCCGCcGCCagGUGGGCccUGGCCacgGCCg -3'
miRNA:   3'- aGGCGcCGG--CACCCG--ACUGGga-CGGg -5'
33515 5' -64.6 NC_007605.1 + 37661 0.67 0.531206
Target:  5'- -gCGCGGCCGUcguGGGCaGuaguCCCgcuCCCa -3'
miRNA:   3'- agGCGCCGGCA---CCCGaCu---GGGac-GGG- -5'
33515 5' -64.6 NC_007605.1 + 113067 0.67 0.531206
Target:  5'- -aUGCGGCCccGGGC--ACCCccGCCCa -3'
miRNA:   3'- agGCGCCGGcaCCCGacUGGGa-CGGG- -5'
33515 5' -64.6 NC_007605.1 + 4053 0.67 0.527517
Target:  5'- -gCGUGGCC-UGGGCgugaagcUGACcuuuggcucggccuCCUGCCCc -3'
miRNA:   3'- agGCGCCGGcACCCG-------ACUG--------------GGACGGG- -5'
33515 5' -64.6 NC_007605.1 + 149685 0.67 0.522002
Target:  5'- -gCGgGGCCGgucggcuGGCUGGCCgaGaCCCg -3'
miRNA:   3'- agGCgCCGGCac-----CCGACUGGgaC-GGG- -5'
33515 5' -64.6 NC_007605.1 + 104718 0.67 0.522002
Target:  5'- --gGUGGUCGUGGGauggcggGGCCUUGUCUg -3'
miRNA:   3'- aggCGCCGGCACCCga-----CUGGGACGGG- -5'
33515 5' -64.6 NC_007605.1 + 88762 0.67 0.511039
Target:  5'- gCCGUuacaagauagcauGGCCGUGGGgugUGACUCaucagguacagcaUGCCCa -3'
miRNA:   3'- aGGCG-------------CCGGCACCCg--ACUGGG-------------ACGGG- -5'
33515 5' -64.6 NC_007605.1 + 110206 0.67 0.504688
Target:  5'- gCCGCgacGGCUGUGGGUgugggggcggcggcgGACCCUugggacGCCg -3'
miRNA:   3'- aGGCG---CCGGCACCCGa--------------CUGGGA------CGGg -5'
33515 5' -64.6 NC_007605.1 + 63046 0.67 0.503784
Target:  5'- gCgGCGGCCGUcuggcgcgcaGGGCUG-CUg-GCCCc -3'
miRNA:   3'- aGgCGCCGGCA----------CCCGACuGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 136552 0.67 0.503784
Target:  5'- gCCG-GGcCCGcGGGCgggGACCCgggUGCCUu -3'
miRNA:   3'- aGGCgCC-GGCaCCCGa--CUGGG---ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.