miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33515 5' -64.6 NC_007605.1 + 39421 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 38297 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 38422 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 38547 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 38672 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 38797 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 39046 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 39171 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 39296 0.71 0.306365
Target:  5'- gCCggGCGGCCGccggUGGGUccgcugGGCCgCUGCCCc -3'
miRNA:   3'- aGG--CGCCGGC----ACCCGa-----CUGG-GACGGG- -5'
33515 5' -64.6 NC_007605.1 + 8281 0.72 0.274732
Target:  5'- aCCGCaGGgCGgcguguggGGGCUGACgCgUGCCCc -3'
miRNA:   3'- aGGCG-CCgGCa-------CCCGACUG-GgACGGG- -5'
33515 5' -64.6 NC_007605.1 + 33907 0.72 0.25135
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCg-GCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 48797 0.74 0.19728
Target:  5'- cUCUGCGGCgGUGGGCUGccagaggcuggcugaGCCaccgagcGCCCg -3'
miRNA:   3'- -AGGCGCCGgCACCCGAC---------------UGGga-----CGGG- -5'
33515 5' -64.6 NC_007605.1 + 12424 0.76 0.140255
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCgaGCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 15493 0.76 0.140255
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCgaGCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 18562 0.76 0.140255
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCgaGCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 21631 0.76 0.140255
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCgaGCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 24700 0.76 0.140255
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCgaGCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 27769 0.76 0.140255
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCgaGCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 30838 0.76 0.140255
Target:  5'- -gUGgGGCCGgucggcUGGGCUGGCCgaGCCCg -3'
miRNA:   3'- agGCgCCGGC------ACCCGACUGGgaCGGG- -5'
33515 5' -64.6 NC_007605.1 + 158818 0.74 0.182216
Target:  5'- aUCCGggggcagggccUGGCCG-GGGCUGACCgCguccGCCCg -3'
miRNA:   3'- -AGGC-----------GCCGGCaCCCGACUGG-Ga---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.