miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33518 3' -56.7 NC_007605.1 + 134353 0.66 0.910077
Target:  5'- aGGCCuccaucAGCUCucuuuuCCCCG-GGCUGGUu -3'
miRNA:   3'- -CCGG------UUGAGucu---GGGGCuCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 53732 0.66 0.910077
Target:  5'- aGGCCAggGCUCcuucggaaAGACCCCGcacGGCcucgcaGAUGc -3'
miRNA:   3'- -CCGGU--UGAG--------UCUGGGGCu--CCGa-----CUAC- -5'
33518 3' -56.7 NC_007605.1 + 63380 0.66 0.910077
Target:  5'- uGGCUGACcugguccCGGACUuuGGgcGGCUGGUGg -3'
miRNA:   3'- -CCGGUUGa------GUCUGGggCU--CCGACUAC- -5'
33518 3' -56.7 NC_007605.1 + 65540 0.66 0.910077
Target:  5'- uGGCCGAUgucuuugCGGACCU--GGGCUGGc- -3'
miRNA:   3'- -CCGGUUGa------GUCUGGGgcUCCGACUac -5'
33518 3' -56.7 NC_007605.1 + 37256 0.66 0.910077
Target:  5'- gGGCCAGCaaaacCAG-CCCggggaaaaGAGaGCUGAUGg -3'
miRNA:   3'- -CCGGUUGa----GUCuGGGg-------CUC-CGACUAC- -5'
33518 3' -56.7 NC_007605.1 + 80389 0.66 0.910077
Target:  5'- aGGCCGuga-AGGCCCUaAGGgaGAUGg -3'
miRNA:   3'- -CCGGUugagUCUGGGGcUCCgaCUAC- -5'
33518 3' -56.7 NC_007605.1 + 133984 0.66 0.904008
Target:  5'- cGGCCGcGCUgAacGugCCCGGGGCgGcgGg -3'
miRNA:   3'- -CCGGU-UGAgU--CugGGGCUCCGaCuaC- -5'
33518 3' -56.7 NC_007605.1 + 103902 0.66 0.904008
Target:  5'- cGGCCAcaGCgUCaggggAGACCUCGAaGCUGAUu -3'
miRNA:   3'- -CCGGU--UG-AG-----UCUGGGGCUcCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 122548 0.66 0.900257
Target:  5'- gGGCCAcguGCUgaaAGuccACCCCGAGGCcgcacaugugggcauUGGUGc -3'
miRNA:   3'- -CCGGU---UGAg--UC---UGGGGCUCCG---------------ACUAC- -5'
33518 3' -56.7 NC_007605.1 + 45069 0.66 0.899624
Target:  5'- cGGUCAAgggugucCUUggcguccggguGGGCCCCGAGGCUcucgcagagugggcaGAUGg -3'
miRNA:   3'- -CCGGUU-------GAG-----------UCUGGGGCUCCGA---------------CUAC- -5'
33518 3' -56.7 NC_007605.1 + 21975 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 156384 0.66 0.897711
Target:  5'- aGCgAGCUCGucGAUCCCGGGGUaGAg- -3'
miRNA:   3'- cCGgUUGAGU--CUGGGGCUCCGaCUac -5'
33518 3' -56.7 NC_007605.1 + 34251 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 31182 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 28113 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 25044 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 18907 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 15838 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 12769 0.66 0.897711
Target:  5'- cGCCucCUCGGggccaGCCgCCGGGGUUGGUu -3'
miRNA:   3'- cCGGuuGAGUC-----UGG-GGCUCCGACUAc -5'
33518 3' -56.7 NC_007605.1 + 10773 0.66 0.897711
Target:  5'- cGGUCAGCaccgcgucgCAGGCCUCGgccGGGCUGcUGc -3'
miRNA:   3'- -CCGGUUGa--------GUCUGGGGC---UCCGACuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.