miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33518 5' -55.6 NC_007605.1 + 48684 0.66 0.929823
Target:  5'- cCCugaugCGCCU---GGCCGGGUCAGa- -3'
miRNA:   3'- aGGug---GCGGAauuCCGGCUCAGUCaa -5'
33518 5' -55.6 NC_007605.1 + 133809 0.66 0.924477
Target:  5'- aUCGCCGaCCUcAAGGCCaAGUCAc-- -3'
miRNA:   3'- aGGUGGC-GGAaUUCCGGcUCAGUcaa -5'
33518 5' -55.6 NC_007605.1 + 62037 0.66 0.924477
Target:  5'- cCCGCCGCC---GGGCCaGGGgCAGc- -3'
miRNA:   3'- aGGUGGCGGaauUCCGG-CUCaGUCaa -5'
33518 5' -55.6 NC_007605.1 + 64794 0.66 0.913059
Target:  5'- aCUAUgGCUgcaaGAGGCCG-GUCAGUg -3'
miRNA:   3'- aGGUGgCGGaa--UUCCGGCuCAGUCAa -5'
33518 5' -55.6 NC_007605.1 + 53406 0.66 0.906988
Target:  5'- cUCCACCacgaUCUUGAgcuGGCgCGGGUCGGUg -3'
miRNA:   3'- -AGGUGGc---GGAAUU---CCG-GCUCAGUCAa -5'
33518 5' -55.6 NC_007605.1 + 151505 0.67 0.894133
Target:  5'- cUCCAcCCGCC---AGGCCuGuguGUCAGUUu -3'
miRNA:   3'- -AGGU-GGCGGaauUCCGG-Cu--CAGUCAA- -5'
33518 5' -55.6 NC_007605.1 + 64544 0.67 0.86567
Target:  5'- cCCACUGCCgagacccAGGCCGAgagGUCuGUa -3'
miRNA:   3'- aGGUGGCGGaau----UCCGGCU---CAGuCAa -5'
33518 5' -55.6 NC_007605.1 + 56874 0.67 0.858008
Target:  5'- aUCUGCCucugGCCUUcccgguuaGAGGCCGGGUCGu-- -3'
miRNA:   3'- -AGGUGG----CGGAA--------UUCCGGCUCAGUcaa -5'
33518 5' -55.6 NC_007605.1 + 49613 0.67 0.85723
Target:  5'- cUCCGCCGCCgcagccgucgauaCCGGGUCAGg- -3'
miRNA:   3'- -AGGUGGCGGaauucc-------GGCUCAGUCaa -5'
33518 5' -55.6 NC_007605.1 + 65350 0.68 0.850138
Target:  5'- gUCCGCCGCC--AGGGUgGAGgaugagCAGg- -3'
miRNA:   3'- -AGGUGGCGGaaUUCCGgCUCa-----GUCaa -5'
33518 5' -55.6 NC_007605.1 + 122842 0.68 0.842069
Target:  5'- cCCACCGCCgc-AGaGCCGcAGUUGGa- -3'
miRNA:   3'- aGGUGGCGGaauUC-CGGC-UCAGUCaa -5'
33518 5' -55.6 NC_007605.1 + 54744 0.68 0.825355
Target:  5'- gCCGCCGCUgcugccgcGGCUGAGUCcGUa -3'
miRNA:   3'- aGGUGGCGGaauu----CCGGCUCAGuCAa -5'
33518 5' -55.6 NC_007605.1 + 53164 0.68 0.816727
Target:  5'- gCCGCCGCCagaaaUUGugcccGCCGGGUCGGg- -3'
miRNA:   3'- aGGUGGCGG-----AAUuc---CGGCUCAGUCaa -5'
33518 5' -55.6 NC_007605.1 + 42169 0.69 0.789857
Target:  5'- gCCACCGUCggcuaccccAAGGCCGGGguuuaCAGUg -3'
miRNA:   3'- aGGUGGCGGaa-------UUCCGGCUCa----GUCAa -5'
33518 5' -55.6 NC_007605.1 + 45539 0.69 0.771208
Target:  5'- gCCACCaGUCUccGGGCCGGGUcCGGg- -3'
miRNA:   3'- aGGUGG-CGGAauUCCGGCUCA-GUCaa -5'
33518 5' -55.6 NC_007605.1 + 104668 0.7 0.72155
Target:  5'- -gCGCCGCCcgGGGGCCagucuccGGGUCAGg- -3'
miRNA:   3'- agGUGGCGGaaUUCCGG-------CUCAGUCaa -5'
33518 5' -55.6 NC_007605.1 + 82083 0.72 0.630758
Target:  5'- cUCCACCGCCgguUAAcuuuaacaagacGGCCGAG-CAGg- -3'
miRNA:   3'- -AGGUGGCGGa--AUU------------CCGGCUCaGUCaa -5'
33518 5' -55.6 NC_007605.1 + 64163 1.06 0.004708
Target:  5'- cUCCACCGCCUUAAGGCCGAGUCAGUUa -3'
miRNA:   3'- -AGGUGGCGGAAUUCCGGCUCAGUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.