miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33522 3' -54.9 NC_007605.1 + 70901 0.66 0.953439
Target:  5'- aGCAUG-GCcaCCaggguGCAGAGCCCCgcGUUCu -3'
miRNA:   3'- -CGUACaCGa-GG-----CGUUUCGGGGa-CAGG- -5'
33522 3' -54.9 NC_007605.1 + 54485 0.66 0.953439
Target:  5'- aGCucgGUGCUa---AAGGCCCC-GUCCa -3'
miRNA:   3'- -CGua-CACGAggcgUUUCGGGGaCAGG- -5'
33522 3' -54.9 NC_007605.1 + 149544 0.66 0.953439
Target:  5'- gGCGUGUGCUgCGCcagcagguAAGGCaggcaCUcGUCCu -3'
miRNA:   3'- -CGUACACGAgGCG--------UUUCGg----GGaCAGG- -5'
33522 3' -54.9 NC_007605.1 + 61770 0.66 0.949342
Target:  5'- cGCuuc--CUCCGCAguccggagacugAGGCCUUUGUCCg -3'
miRNA:   3'- -CGuacacGAGGCGU------------UUCGGGGACAGG- -5'
33522 3' -54.9 NC_007605.1 + 19158 0.66 0.945012
Target:  5'- aGCAaGaUGCUCUcCAccauGGCCCCcggGUCCa -3'
miRNA:   3'- -CGUaC-ACGAGGcGUu---UCGGGGa--CAGG- -5'
33522 3' -54.9 NC_007605.1 + 17209 0.66 0.940446
Target:  5'- ---aGgggGCcaCCGuCAuccAGCCCCUGUCCg -3'
miRNA:   3'- cguaCa--CGa-GGC-GUu--UCGGGGACAGG- -5'
33522 3' -54.9 NC_007605.1 + 94459 0.66 0.940446
Target:  5'- uCAUGUGCagcUUGCAuacgacGCCCgUGUCCu -3'
miRNA:   3'- cGUACACGa--GGCGUuu----CGGGgACAGG- -5'
33522 3' -54.9 NC_007605.1 + 92055 0.66 0.940446
Target:  5'- aGCAcGccGCUCaCGUAGcuCCUCUGUCCg -3'
miRNA:   3'- -CGUaCa-CGAG-GCGUUucGGGGACAGG- -5'
33522 3' -54.9 NC_007605.1 + 119433 0.66 0.935643
Target:  5'- aGCGUGgagGCUCaGCuAGGGUCUCUG-CCu -3'
miRNA:   3'- -CGUACa--CGAGgCG-UUUCGGGGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 1870 0.67 0.932647
Target:  5'- -----cGCUCCGCGcucggccuagacccgGGGCCCCUGa-- -3'
miRNA:   3'- cguacaCGAGGCGU---------------UUCGGGGACagg -5'
33522 3' -54.9 NC_007605.1 + 51326 0.67 0.930601
Target:  5'- aGCAguaGUGCUCCcCuuuucCCCCUGgUCCg -3'
miRNA:   3'- -CGUa--CACGAGGcGuuuc-GGGGAC-AGG- -5'
33522 3' -54.9 NC_007605.1 + 72558 0.67 0.929564
Target:  5'- cGCAgcUGC-CgGCuaagaccaccGCCCCUGUCCa -3'
miRNA:   3'- -CGUacACGaGgCGuuu-------CGGGGACAGG- -5'
33522 3' -54.9 NC_007605.1 + 39431 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 39306 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 39181 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 38807 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 38682 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 38557 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 38432 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5'
33522 3' -54.9 NC_007605.1 + 38307 0.67 0.925318
Target:  5'- cGCcgGUgGgUCCGCuGGGCCgCUGcCCc -3'
miRNA:   3'- -CGuaCA-CgAGGCGuUUCGGgGACaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.