miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 32180 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 19905 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29111 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 35249 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 16836 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 13767 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 22973 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 26042 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 64655 0.66 0.55389
Target:  5'- aCCCagGCCCUcuauaggcaccuggGGCGCUACCUcuuucagcgagccggGguGGGUg -3'
miRNA:   3'- gGGG--UGGGG--------------CCGCGGUGGA---------------CguCCCG- -5'
33526 3' -65.5 NC_007605.1 + 159253 0.66 0.552961
Target:  5'- aCCCuCgCCGGCG-CGCCUGUccucccAGGGa -3'
miRNA:   3'- gGGGuGgGGCCGCgGUGGACG------UCCCg -5'
33526 3' -65.5 NC_007605.1 + 31061 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 18786 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 34130 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 27992 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12648 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 126214 0.66 0.552961
Target:  5'- -aCCGCCCUGuGCuGCCACCUGCc---- -3'
miRNA:   3'- ggGGUGGGGC-CG-CGGUGGACGucccg -5'
33526 3' -65.5 NC_007605.1 + 43428 0.66 0.552961
Target:  5'- cCCCCACCCUGuGUuacuGUCGCCUGauuauccuGGCu -3'
miRNA:   3'- -GGGGUGGGGC-CG----CGGUGGACguc-----CCG- -5'
33526 3' -65.5 NC_007605.1 + 107274 0.66 0.552961
Target:  5'- gCCCCACauaCagauaGGUGUCAUaguagcGCAGGGCc -3'
miRNA:   3'- -GGGGUGg--Gg----CCGCGGUGga----CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 137490 0.66 0.552961
Target:  5'- aCCCUgccuggagACCCUGGgGUCuguCUGgGGGGCu -3'
miRNA:   3'- -GGGG--------UGGGGCCgCGGug-GACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 15717 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.