miRNA display CGI


Results 1 - 20 of 368 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 32180 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 35249 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 22973 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 26042 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29111 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 16836 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 13767 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 19905 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 34906 0.66 0.534493
Target:  5'- aCCCCGgcggCCCGGUGUCAgucccCCUGCAGccGCc -3'
miRNA:   3'- -GGGGUg---GGGCCGCGGU-----GGACGUCc-CG- -5'
33526 3' -65.5 NC_007605.1 + 163395 0.66 0.542778
Target:  5'- -gCCACCuuGGCcaccuugGCCugguCCUGCAGGcucuGCu -3'
miRNA:   3'- ggGGUGGggCCG-------CGGu---GGACGUCC----CG- -5'
33526 3' -65.5 NC_007605.1 + 126214 0.66 0.552961
Target:  5'- -aCCGCCCUGuGCuGCCACCUGCc---- -3'
miRNA:   3'- ggGGUGGGGC-CG-CGGUGGACGucccg -5'
33526 3' -65.5 NC_007605.1 + 56163 0.66 0.534493
Target:  5'- gUCCGCCguacaCCuGCG-CACgUGCAGGGCc -3'
miRNA:   3'- gGGGUGG-----GGcCGCgGUGgACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 126530 0.66 0.52534
Target:  5'- aCgUCACUgCGGUGCUuccuGCCUGUGGaGGCu -3'
miRNA:   3'- -GgGGUGGgGCCGCGG----UGGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 116617 0.66 0.52534
Target:  5'- uUCCACCCCGGC-CagguCCaGgAGGGUg -3'
miRNA:   3'- gGGGUGGGGCCGcGgu--GGaCgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 137159 0.66 0.528994
Target:  5'- gCCCACCaCCGaGgGCCACCaccGCGGaaagaaacuggugcaGGCc -3'
miRNA:   3'- gGGGUGG-GGC-CgCGGUGGa--CGUC---------------CCG- -5'
33526 3' -65.5 NC_007605.1 + 170406 0.66 0.542778
Target:  5'- gCCCCagggcugACCCCGGCaaacGUgACC--CGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCG----CGgUGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 136666 0.66 0.522606
Target:  5'- cCUCCACCCgugccuccuuacuaCGGaucCCACUUGC-GGGCa -3'
miRNA:   3'- -GGGGUGGG--------------GCCgc-GGUGGACGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 169868 0.66 0.542778
Target:  5'- gCCCCagggcugACCCCGGCaaacGUgACC--CGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCG----CGgUGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 151097 0.66 0.534493
Target:  5'- gCCCC-CCUgGGCgGCCgcaGCCUGCcccucGGCg -3'
miRNA:   3'- -GGGGuGGGgCCG-CGG---UGGACGuc---CCG- -5'
33526 3' -65.5 NC_007605.1 + 100172 0.66 0.52534
Target:  5'- uCCCCAUCCCaGGCa--ACCUcCAGcGGCa -3'
miRNA:   3'- -GGGGUGGGG-CCGcggUGGAcGUC-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.