miRNA display CGI


Results 21 - 40 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 34130 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 56163 0.66 0.534493
Target:  5'- gUCCGCCguacaCCuGCG-CACgUGCAGGGCc -3'
miRNA:   3'- gGGGUGG-----GGcCGCgGUGgACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 159773 0.66 0.52534
Target:  5'- cCCCCGCCa--GCGCCuCCUcGCAGGc- -3'
miRNA:   3'- -GGGGUGGggcCGCGGuGGA-CGUCCcg -5'
33526 3' -65.5 NC_007605.1 + 24924 0.66 0.516248
Target:  5'- cCCCCagacagACCCCaGgGUCuCCaGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 117595 0.66 0.509921
Target:  5'- cCCCCuCCCCuGCGCCuucgugcacaccaAggacaagacguccagCCUGCAGuGGCc -3'
miRNA:   3'- -GGGGuGGGGcCGCGG-------------U---------------GGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 53155 0.66 0.543701
Target:  5'- gCCgGCCCUGcCGCCGCCagaaauugUGCccgccgggucGGGGCu -3'
miRNA:   3'- gGGgUGGGGCcGCGGUGG--------ACG----------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12648 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 150660 0.66 0.516248
Target:  5'- gCCCuCCUCGGCccuguCCACCUGUauguccAGGuGCa -3'
miRNA:   3'- gGGGuGGGGCCGc----GGUGGACG------UCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 126214 0.66 0.552961
Target:  5'- -aCCGCCCUGuGCuGCCACCUGCc---- -3'
miRNA:   3'- ggGGUGGGGC-CG-CGGUGGACGucccg -5'
33526 3' -65.5 NC_007605.1 + 159253 0.66 0.552961
Target:  5'- aCCCuCgCCGGCG-CGCCUGUccucccAGGGa -3'
miRNA:   3'- gGGGuGgGGCCGCgGUGGACG------UCCCg -5'
33526 3' -65.5 NC_007605.1 + 116617 0.66 0.52534
Target:  5'- uUCCACCCCGGC-CagguCCaGgAGGGUg -3'
miRNA:   3'- gGGGUGGGGCCGcGgu--GGaCgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 151097 0.66 0.534493
Target:  5'- gCCCC-CCUgGGCgGCCgcaGCCUGCcccucGGCg -3'
miRNA:   3'- -GGGGuGGGgCCG-CGG---UGGACGuc---CCG- -5'
33526 3' -65.5 NC_007605.1 + 161773 0.66 0.550178
Target:  5'- gCCCCGCUggggacagggaCCGaGCGCCGCCUGgaaaaguugugccaCAGGu- -3'
miRNA:   3'- -GGGGUGG-----------GGC-CGCGGUGGAC--------------GUCCcg -5'
33526 3' -65.5 NC_007605.1 + 136666 0.66 0.522606
Target:  5'- cCUCCACCCgugccuccuuacuaCGGaucCCACUUGC-GGGCa -3'
miRNA:   3'- -GGGGUGGG--------------GCCgc-GGUGGACGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 100172 0.66 0.52534
Target:  5'- uCCCCAUCCCaGGCa--ACCUcCAGcGGCa -3'
miRNA:   3'- -GGGGUGGGG-CCGcggUGGAcGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 170406 0.66 0.542778
Target:  5'- gCCCCagggcugACCCCGGCaaacGUgACC--CGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCG----CGgUGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 119305 0.66 0.50632
Target:  5'- aCCCCgaagcACCuuGGCccCCACCgGCAuaaagcuGGGCa -3'
miRNA:   3'- -GGGG-----UGGggCCGc-GGUGGaCGU-------CCCG- -5'
33526 3' -65.5 NC_007605.1 + 95129 0.66 0.504523
Target:  5'- gCCCCAucgcuuCCCCaGCgGCCuccagguccaagcaGCaCUGCGGGGUc -3'
miRNA:   3'- -GGGGU------GGGGcCG-CGG--------------UG-GACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 126530 0.66 0.52534
Target:  5'- aCgUCACUgCGGUGCUuccuGCCUGUGGaGGCu -3'
miRNA:   3'- -GgGGUGGgGCCGCGG----UGGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 31061 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.