miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 121290 0.66 0.52534
Target:  5'- gCCCCGCCgUCGGCugcaucuccGCCGcgcgugucucucCCUGuCAGGaGCa -3'
miRNA:   3'- -GGGGUGG-GGCCG---------CGGU------------GGAC-GUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 17612 0.66 0.531741
Target:  5'- uCCCUGCCUcuccaucgccgagaCGGUGaCG-CUGCAGGGCc -3'
miRNA:   3'- -GGGGUGGG--------------GCCGCgGUgGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 126214 0.66 0.552961
Target:  5'- -aCCGCCCUGuGCuGCCACCUGCc---- -3'
miRNA:   3'- ggGGUGGGGC-CG-CGGUGGACGucccg -5'
33526 3' -65.5 NC_007605.1 + 146697 0.66 0.542778
Target:  5'- aCCCUgccugagACCCUGGgGUCuguCUGgGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCgCGGug-GACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 86297 0.66 0.53725
Target:  5'- gCCCCugcugaccagcaggaGCCCUuaGUGCCAgCUGCAugggaguGGGCa -3'
miRNA:   3'- -GGGG---------------UGGGGc-CGCGGUgGACGU-------CCCG- -5'
33526 3' -65.5 NC_007605.1 + 55878 0.66 0.534493
Target:  5'- aUgCugCCCGGCgGCCuaGCCauCGGGGCa -3'
miRNA:   3'- gGgGugGGGCCG-CGG--UGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 65968 0.66 0.543701
Target:  5'- uUCUgGCaCCgGGCGCCACaCaGCgAGGGUc -3'
miRNA:   3'- -GGGgUG-GGgCCGCGGUG-GaCG-UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 131258 0.66 0.516248
Target:  5'- uCCCC-CCCCaugaagcggguGGCGCgGggucCCUGCcuGGCa -3'
miRNA:   3'- -GGGGuGGGG-----------CCGCGgU----GGACGucCCG- -5'
33526 3' -65.5 NC_007605.1 + 46353 0.67 0.498258
Target:  5'- aUCUCGCCCCccuaauuGCGCCAUCUGCcuacgcGaGGCu -3'
miRNA:   3'- -GGGGUGGGGc------CGCGGUGGACGu-----C-CCG- -5'
33526 3' -65.5 NC_007605.1 + 5278 0.67 0.497366
Target:  5'- --gCAUCCCGGCGaCCACCagcucugucaugcUGCguggccuccGGGGCu -3'
miRNA:   3'- gggGUGGGGCCGC-GGUGG-------------ACG---------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 126093 0.67 0.489368
Target:  5'- aCCCGgCCCGGagacuggugGCCcuCCUGCgaagggaagauGGGGCa -3'
miRNA:   3'- gGGGUgGGGCCg--------CGGu-GGACG-----------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 159123 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 165452 0.67 0.498258
Target:  5'- uUCCCaaGCCCUGGCaccuGCCagugACCUGCGuuGGGa -3'
miRNA:   3'- -GGGG--UGGGGCCG----CGG----UGGACGU--CCCg -5'
33526 3' -65.5 NC_007605.1 + 143778 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 18256 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 137641 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 146847 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 15187 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 152985 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 12118 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.