miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 30473 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28639 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28843 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 46353 0.67 0.498258
Target:  5'- aUCUCGCCCCccuaauuGCGCCAUCUGCcuacgcGaGGCu -3'
miRNA:   3'- -GGGGUGGGGc------CGCGGUGGACGu-----C-CCG- -5'
33526 3' -65.5 NC_007605.1 + 5278 0.67 0.497366
Target:  5'- --gCAUCCCGGCGaCCACCagcucugucaugcUGCguggccuccGGGGCu -3'
miRNA:   3'- gggGUGGGGCCGC-GGUGG-------------ACG---------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 59959 0.67 0.489368
Target:  5'- cCCCC-CUgCGGaaGCCGCCugggUGCGGGGa -3'
miRNA:   3'- -GGGGuGGgGCCg-CGGUGG----ACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 108261 0.67 0.480554
Target:  5'- aCCCgCACCCCaGUccacaGCCACCgGCcaagguccuGGGCc -3'
miRNA:   3'- -GGG-GUGGGGcCG-----CGGUGGaCGu--------CCCG- -5'
33526 3' -65.5 NC_007605.1 + 151509 0.67 0.471817
Target:  5'- aCCCGCCaggcCUGuGUGUCAgUUUGCAGGGCc -3'
miRNA:   3'- gGGGUGG----GGC-CGCGGU-GGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 149319 0.67 0.471817
Target:  5'- uCCCCGUCCCaGCGCCAgUgGCucuuAGGGUa -3'
miRNA:   3'- -GGGGUGGGGcCGCGGUgGaCG----UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 40192 0.67 0.463162
Target:  5'- gUCCUgggACCCC-GCGCCgACUgGCAGGGg -3'
miRNA:   3'- -GGGG---UGGGGcCGCGG-UGGaCGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 39820 0.67 0.461441
Target:  5'- uCCCCuggACCCCaGCcCCGCCgaucccuccccCAGGGCg -3'
miRNA:   3'- -GGGG---UGGGGcCGcGGUGGac---------GUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 67806 0.67 0.45459
Target:  5'- aCCUugCCUacgGGCG-CACCUGUguccuGGGCa -3'
miRNA:   3'- gGGGugGGG---CCGCgGUGGACGu----CCCG- -5'
33526 3' -65.5 NC_007605.1 + 33601 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 165452 0.67 0.498258
Target:  5'- uUCCCaaGCCCUGGCaccuGCCagugACCUGCGuuGGGa -3'
miRNA:   3'- -GGGG--UGGGGCCG----CGG----UGGACGU--CCCg -5'
33526 3' -65.5 NC_007605.1 + 126093 0.67 0.489368
Target:  5'- aCCCGgCCCGGagacuggugGCCcuCCUGCgaagggaagauGGGGCa -3'
miRNA:   3'- gGGGUgGGGCCg--------CGGu-GGACG-----------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29918 0.67 0.471817
Target:  5'- aCCCGgCCCGG-GCCcCCcgGUAuGGGCc -3'
miRNA:   3'- gGGGUgGGGCCgCGGuGGa-CGU-CCCG- -5'
33526 3' -65.5 NC_007605.1 + 29862 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 159123 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 30371 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28741 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.