Results 41 - 60 of 368 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141390 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 141594 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29914 | 0.75 | 0.161179 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCcccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa--------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 30933 | 0.75 | 0.157417 |
Target: 5'- aCCCCGaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUgGGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 87795 | 0.75 | 0.157417 |
Target: 5'- cCUCCugCCgCGGgGCCuCCUGCcgcGGGGCu -3' miRNA: 3'- -GGGGugGG-GCCgCGGuGGACG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 81467 | 0.75 | 0.153006 |
Target: 5'- aCCCGCCCCGGCugggccuauuguccgGCCcugggaGCCaucccugacacaggcUGCGGGGCa -3' miRNA: 3'- gGGGUGGGGCCG---------------CGG------UGG---------------ACGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 28996 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 28793 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29098 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 28589 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 107157 | 0.74 | 0.177051 |
Target: 5'- uCUCCGgCCUGGC-CCG-CUGCAGGGCu -3' miRNA: 3'- -GGGGUgGGGCCGcGGUgGACGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 121107 | 0.74 | 0.172957 |
Target: 5'- -gCCGCCCCGGCGCaCACCccaguuggUGCAuuGGCa -3' miRNA: 3'- ggGGUGGGGCCGCG-GUGG--------ACGUc-CCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 87824 | 0.74 | 0.185497 |
Target: 5'- nCUCCugCCgCGGgGCCuCCUGCcgcGGGGCc -3' miRNA: 3'- -GGGGugGG-GCCgCGGuGGACG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29302 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29404 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 28691 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29200 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 28895 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 584 | 0.74 | 0.168552 |
Target: 5'- gCCCCACCCCccgaugccccccgGGgGUCuuuCCUGgGGGGCc -3' miRNA: 3'- -GGGGUGGGG-------------CCgCGGu--GGACgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1644 | 0.74 | 0.168552 |
Target: 5'- gCCCCACCCCccgaugccccccgGGgGUCuuuCCUGgGGGGCc -3' miRNA: 3'- -GGGGUGGGG-------------CCgCGGu--GGACgUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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