miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 133234 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 133109 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 132984 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 132859 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 132110 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 2075 0.73 0.217906
Target:  5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3'
miRNA:   3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 132610 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 132485 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 132360 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 132235 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 131985 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 1538 0.73 0.217906
Target:  5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3'
miRNA:   3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 101878 0.72 0.243924
Target:  5'- aCCCCACgCCGGCcucgguCCGacuuuuugagauCCUGCAGGGa -3'
miRNA:   3'- -GGGGUGgGGCCGc-----GGU------------GGACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 66346 0.72 0.243924
Target:  5'- gUCCCAUggaaCCGGCGCaGgUUGCGGGGCc -3'
miRNA:   3'- -GGGGUGg---GGCCGCGgUgGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 87751 0.72 0.255034
Target:  5'- cUCCUGCCgUGGgGCCuCCUGCcgcGGGGCc -3'
miRNA:   3'- -GGGGUGGgGCCgCGGuGGACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 11836 0.72 0.257305
Target:  5'- gCCUgGCCCUGGUGCgggggGCCUGCgaggaggcgcuggcgGGGGCa -3'
miRNA:   3'- -GGGgUGGGGCCGCGg----UGGACG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28417 0.72 0.238521
Target:  5'- -gCCGgCCCGGCGUC-CUUGCGGcGGCc -3'
miRNA:   3'- ggGGUgGGGCCGCGGuGGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 131232 0.72 0.238521
Target:  5'- -gCCGgCCCGGCGUC-CUUGCGGcGGCc -3'
miRNA:   3'- ggGGUgGGGCCGCGGuGGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 109422 0.72 0.255034
Target:  5'- aCCgCUACCCCuGgGCgG-CUGCAGGGCa -3'
miRNA:   3'- -GG-GGUGGGGcCgCGgUgGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 70464 0.72 0.247766
Target:  5'- aCCCCACUcuaccgCCGGgGCCGCauucccugcaucguCUGCGuGGGCu -3'
miRNA:   3'- -GGGGUGG------GGCCgCGGUG--------------GACGU-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.