Results 61 - 80 of 368 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 29200 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 30219 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 30423 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 30627 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 30729 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 30831 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29710 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29608 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29506 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 29404 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 28996 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 30321 | 0.74 | 0.177051 |
Target: 5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3' miRNA: 3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 110107 | 0.74 | 0.185497 |
Target: 5'- gCCCgugugGCCCgGGCgGCCuACCUGC-GGGCg -3' miRNA: 3'- gGGG-----UGGGgCCG-CGG-UGGACGuCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 87824 | 0.74 | 0.185497 |
Target: 5'- nCUCCugCCgCGGgGCCuCCUGCcgcGGGGCc -3' miRNA: 3'- -GGGGugGG-GCCgCGGuGGACG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 132610 | 0.73 | 0.198832 |
Target: 5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3' miRNA: 3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 132485 | 0.73 | 0.198832 |
Target: 5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3' miRNA: 3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 132235 | 0.73 | 0.198832 |
Target: 5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3' miRNA: 3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 131985 | 0.73 | 0.198832 |
Target: 5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3' miRNA: 3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 132360 | 0.73 | 0.198832 |
Target: 5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3' miRNA: 3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 132110 | 0.73 | 0.198832 |
Target: 5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3' miRNA: 3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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