miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 28443 0.66 0.516248
Target:  5'- uCCCC-CCCCaugaagcggguGGCGCgGggucCCUGCcuGGCa -3'
miRNA:   3'- -GGGGuGGGG-----------CCGCGgU----GGACGucCCG- -5'
33526 3' -65.5 NC_007605.1 + 150660 0.66 0.516248
Target:  5'- gCCCuCCUCGGCccuguCCACCUGUauguccAGGuGCa -3'
miRNA:   3'- gGGGuGGGGCCGc----GGUGGACG------UCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 48314 0.66 0.510822
Target:  5'- aCUC-CCCUGGCcCCAgCUGCauuccaagaggcccgGGGGCa -3'
miRNA:   3'- gGGGuGGGGCCGcGGUgGACG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 117595 0.66 0.509921
Target:  5'- cCCCCuCCCCuGCGCCuucgugcacaccaAggacaagacguccagCCUGCAGuGGCc -3'
miRNA:   3'- -GGGGuGGGGcCGCGG-------------U---------------GGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 94027 0.66 0.507219
Target:  5'- aCCCCGCCCaGGCaCCACCaGCcaaGCg -3'
miRNA:   3'- -GGGGUGGGgCCGcGGUGGaCGuccCG- -5'
33526 3' -65.5 NC_007605.1 + 2679 0.66 0.507219
Target:  5'- aCCgGCCCCGGaGCaga-UGCcAGGGCg -3'
miRNA:   3'- gGGgUGGGGCCgCGguggACG-UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 119305 0.66 0.50632
Target:  5'- aCCCCgaagcACCuuGGCccCCACCgGCAuaaagcuGGGCa -3'
miRNA:   3'- -GGGG-----UGGggCCGc-GGUGGaCGU-------CCCG- -5'
33526 3' -65.5 NC_007605.1 + 95129 0.66 0.504523
Target:  5'- gCCCCAucgcuuCCCCaGCgGCCuccagguccaagcaGCaCUGCGGGGUc -3'
miRNA:   3'- -GGGGU------GGGGcCG-CGG--------------UG-GACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 36453 0.67 0.501834
Target:  5'- cCCCCGCCCCcaccacccccaCCACCUcagcGCAGGGa -3'
miRNA:   3'- -GGGGUGGGGccgc-------GGUGGA----CGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 95694 0.67 0.498258
Target:  5'- gCCCACCCgaGG-GUCAUgggcucaugCUGUGGGGCa -3'
miRNA:   3'- gGGGUGGGg-CCgCGGUG---------GACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 46353 0.67 0.498258
Target:  5'- aUCUCGCCCCccuaauuGCGCCAUCUGCcuacgcGaGGCu -3'
miRNA:   3'- -GGGGUGGGGc------CGCGGUGGACGu-----C-CCG- -5'
33526 3' -65.5 NC_007605.1 + 165452 0.67 0.498258
Target:  5'- uUCCCaaGCCCUGGCaccuGCCagugACCUGCGuuGGGa -3'
miRNA:   3'- -GGGG--UGGGGCCG----CGG----UGGACGU--CCCg -5'
33526 3' -65.5 NC_007605.1 + 5278 0.67 0.497366
Target:  5'- --gCAUCCCGGCGaCCACCagcucugucaugcUGCguggccuccGGGGCu -3'
miRNA:   3'- gggGUGGGGCCGC-GGUGG-------------ACG---------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 89073 0.67 0.489368
Target:  5'- -gCCACUCgGGgGCCugaggGCAGGGCc -3'
miRNA:   3'- ggGGUGGGgCCgCGGugga-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 59959 0.67 0.489368
Target:  5'- cCCCC-CUgCGGaaGCCGCCugggUGCGGGGa -3'
miRNA:   3'- -GGGGuGGgGCCg-CGGUGG----ACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 78260 0.67 0.489368
Target:  5'- uCCUCACugggCCCGGaCGCCAUcaagagCUGguGGGa -3'
miRNA:   3'- -GGGGUG----GGGCC-GCGGUG------GACguCCCg -5'
33526 3' -65.5 NC_007605.1 + 126093 0.67 0.489368
Target:  5'- aCCCGgCCCGGagacuggugGCCcuCCUGCgaagggaagauGGGGCa -3'
miRNA:   3'- gGGGUgGGGCCg--------CGGu-GGACG-----------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 61510 0.67 0.480554
Target:  5'- cCUCCGCCCgcaGGUagGCCGCCcggGCcacacGGGCg -3'
miRNA:   3'- -GGGGUGGGg--CCG--CGGUGGa--CGu----CCCG- -5'
33526 3' -65.5 NC_007605.1 + 19953 0.67 0.480554
Target:  5'- gCCCGCuauaCCCaGGCcccGCCGCCUGUuuGGCc -3'
miRNA:   3'- gGGGUG----GGG-CCG---CGGUGGACGucCCG- -5'
33526 3' -65.5 NC_007605.1 + 163464 0.67 0.480554
Target:  5'- --gCACCCCGGgGaaUACCUGCAuaaguagguGGGCg -3'
miRNA:   3'- gggGUGGGGCCgCg-GUGGACGU---------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.