Results 1 - 20 of 368 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 53 | 0.7 | 0.323627 |
Target: 5'- cCCCCgauGCCCCccgGGgGUCuuuCCUGgGGGGCc -3' miRNA: 3'- -GGGG---UGGGG---CCgCGGu--GGACgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 144 | 0.69 | 0.381604 |
Target: 5'- aCCCCggaGCCCCGG-GUCACguUUGCcGGGGUc -3' miRNA: 3'- -GGGG---UGGGGCCgCGGUG--GACG-UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 212 | 0.7 | 0.340308 |
Target: 5'- uCCCCGcCCCCcuugggggcuuggcuGGCGCgGCCg--GGGGCg -3' miRNA: 3'- -GGGGU-GGGG---------------CCGCGgUGGacgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 478 | 0.73 | 0.217906 |
Target: 5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3' miRNA: 3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 584 | 0.74 | 0.168552 |
Target: 5'- gCCCCACCCCccgaugccccccgGGgGUCuuuCCUGgGGGGCc -3' miRNA: 3'- -GGGGUGGGG-------------CCgCGGu--GGACgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 682 | 0.69 | 0.381604 |
Target: 5'- aCCCCggaGCCCCGG-GUCACguUUGCcGGGGUc -3' miRNA: 3'- -GGGG---UGGGGCCgCGGUG--GACG-UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 750 | 0.7 | 0.340308 |
Target: 5'- uCCCCGcCCCCcuugggggcuuggcuGGCGCgGCCg--GGGGCg -3' miRNA: 3'- -GGGGU-GGGG---------------CCGCGgUGGacgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1015 | 0.73 | 0.217906 |
Target: 5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3' miRNA: 3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1114 | 0.7 | 0.297197 |
Target: 5'- cCCCCauGCCCCacgGGgGUCuuuCCUGgGGGGCc -3' miRNA: 3'- -GGGG--UGGGG---CCgCGGu--GGACgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1204 | 0.69 | 0.381604 |
Target: 5'- aCCCCggaGCCCCGG-GUCACguUUGCcGGGGUc -3' miRNA: 3'- -GGGG---UGGGGCCgCGGUG--GACG-UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1272 | 0.7 | 0.340308 |
Target: 5'- uCCCCGcCCCCcuugggggcuuggcuGGCGCgGCCg--GGGGCg -3' miRNA: 3'- -GGGGU-GGGG---------------CCGCGgUGGacgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1538 | 0.73 | 0.217906 |
Target: 5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3' miRNA: 3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1644 | 0.74 | 0.168552 |
Target: 5'- gCCCCACCCCccgaugccccccgGGgGUCuuuCCUGgGGGGCc -3' miRNA: 3'- -GGGGUGGGG-------------CCgCGGu--GGACgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1742 | 0.69 | 0.381604 |
Target: 5'- aCCCCggaGCCCCGG-GUCACguUUGCcGGGGUc -3' miRNA: 3'- -GGGG---UGGGGCCgCGGUG--GACG-UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 1810 | 0.7 | 0.340308 |
Target: 5'- uCCCCGcCCCCcuugggggcuuggcuGGCGCgGCCg--GGGGCg -3' miRNA: 3'- -GGGGU-GGGG---------------CCGCGgUGGacgUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 2075 | 0.73 | 0.217906 |
Target: 5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3' miRNA: 3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 2679 | 0.66 | 0.507219 |
Target: 5'- aCCgGCCCCGGaGCaga-UGCcAGGGCg -3' miRNA: 3'- gGGgUGGGGCCgCGguggACG-UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 2706 | 0.66 | 0.516248 |
Target: 5'- --gCGgCCCGGCGCCaacagGCCUuucagacCAGGGCg -3' miRNA: 3'- gggGUgGGGCCGCGG-----UGGAc------GUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 5278 | 0.67 | 0.497366 |
Target: 5'- --gCAUCCCGGCGaCCACCagcucugucaugcUGCguggccuccGGGGCu -3' miRNA: 3'- gggGUGGGGCCGC-GGUGG-------------ACG---------UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 8801 | 0.67 | 0.463162 |
Target: 5'- cUCUgACCCCGGUGCCggagacgggcaGCUacgugGCGGGGg -3' miRNA: 3'- -GGGgUGGGGCCGCGG-----------UGGa----CGUCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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