miRNA display CGI


Results 21 - 40 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 9554 0.73 0.205337
Target:  5'- gCCCACcugcgaccugccagaCCUGGaCGCgGcCCUGCAGGGCc -3'
miRNA:   3'- gGGGUG---------------GGGCC-GCGgU-GGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 10567 0.68 0.421194
Target:  5'- aCagGCCCgGGC-CCAggcCUUGCAGGGCa -3'
miRNA:   3'- gGggUGGGgCCGcGGU---GGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 10793 0.67 0.4788
Target:  5'- gCCUCGgCCgGGCuGCUGCUggguggaggaggGCAGGGCu -3'
miRNA:   3'- -GGGGUgGGgCCG-CGGUGGa-----------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 11635 0.7 0.303644
Target:  5'- uCCCgGgCCCGGgGCgGCCggagGCagagGGGGCg -3'
miRNA:   3'- -GGGgUgGGGCCgCGgUGGa---CG----UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 11836 0.72 0.257305
Target:  5'- gCCUgGCCCUGGUGCgggggGCCUGCgaggaggcgcuggcgGGGGCa -3'
miRNA:   3'- -GGGgUGGGGCCGCGg----UGGACG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12118 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12391 0.68 0.43771
Target:  5'- cCCCCggcagcugGCCCCgaggaGGCGCCcggagugggGCCggucgGCuGGGCu -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGG---------UGGa----CGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12648 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12756 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12844 0.69 0.381604
Target:  5'- aCCCCagaGCCCCucgGGC-CCGCCUcCAGGcGCc -3'
miRNA:   3'- -GGGG---UGGGG---CCGcGGUGGAcGUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 13767 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 14179 0.69 0.359071
Target:  5'- cCCCCAgCCCCaucCGCgGCCcGCGGGaGCa -3'
miRNA:   3'- -GGGGU-GGGGcc-GCGgUGGaCGUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 15187 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 15460 0.68 0.43771
Target:  5'- cCCCCggcagcugGCCCCgaggaGGCGCCcggagugggGCCggucgGCuGGGCu -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGG---------UGGa----CGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 15717 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 15825 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 15913 0.69 0.381604
Target:  5'- aCCCCagaGCCCCucgGGC-CCGCCUcCAGGcGCc -3'
miRNA:   3'- -GGGG---UGGGG---CCGcGGUGGAcGUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 16836 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 17612 0.66 0.531741
Target:  5'- uCCCUGCCUcuccaucgccgagaCGGUGaCG-CUGCAGGGCc -3'
miRNA:   3'- -GGGGUGGG--------------GCCGCgGUgGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 17719 0.68 0.436875
Target:  5'- cCCCCuCCCCGGaCGCCugggcgccccucaACCccgAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCC-GCGG-------------UGGacgUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.