miRNA display CGI


Results 41 - 60 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 18256 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 18529 0.68 0.43771
Target:  5'- cCCCCggcagcugGCCCCgaggaGGCGCCcggagugggGCCggucgGCuGGGCu -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGG---------UGGa----CGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 18786 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 18894 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 18981 0.69 0.381604
Target:  5'- aCCCCagaGCCCCucgGGC-CCGCCUcCAGGcGCc -3'
miRNA:   3'- -GGGG---UGGGG---CCGcGGUGGAcGUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 19905 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 19953 0.67 0.480554
Target:  5'- gCCCGCuauaCCCaGGCcccGCCGCCUGUuuGGCc -3'
miRNA:   3'- gGGGUG----GGG-CCG---CGGUGGACGucCCG- -5'
33526 3' -65.5 NC_007605.1 + 20866 0.69 0.373989
Target:  5'- gCUCUGCUCUGGCGCgGCCUcgGCuGGGa -3'
miRNA:   3'- -GGGGUGGGGCCGCGgUGGA--CGuCCCg -5'
33526 3' -65.5 NC_007605.1 + 21325 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 21598 0.68 0.43771
Target:  5'- cCCCCggcagcugGCCCCgaggaGGCGCCcggagugggGCCggucgGCuGGGCu -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGG---------UGGa----CGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 21855 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 21962 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 22050 0.69 0.381604
Target:  5'- aCCCCagaGCCCCucgGGC-CCGCCUcCAGGcGCc -3'
miRNA:   3'- -GGGG---UGGGG---CCGcGGUGGAcGUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 22973 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 24394 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 24667 0.68 0.43771
Target:  5'- cCCCCggcagcugGCCCCgaggaGGCGCCcggagugggGCCggucgGCuGGGCu -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGG---------UGGa----CGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 24924 0.66 0.516248
Target:  5'- cCCCCagacagACCCCaGgGUCuCCaGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 25031 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 25119 0.69 0.381604
Target:  5'- aCCCCagaGCCCCucgGGC-CCGCCUcCAGGcGCc -3'
miRNA:   3'- -GGGG---UGGGG---CCGcGGUGGAcGUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 26042 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.