miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 27463 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 27475 0.66 0.543701
Target:  5'- uCCCCGggaCgUGGUGCUuCCUaaagGCGGGGCu -3'
miRNA:   3'- -GGGGUg--GgGCCGCGGuGGA----CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 27736 0.68 0.43771
Target:  5'- cCCCCggcagcugGCCCCgaggaGGCGCCcggagugggGCCggucgGCuGGGCu -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGG---------UGGa----CGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 27992 0.66 0.552961
Target:  5'- cCCCCagacagACCCCaGgGUCuCCagGCAGGGUc -3'
miRNA:   3'- -GGGG------UGGGGcCgCGGuGGa-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28100 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28188 0.69 0.381604
Target:  5'- aCCCCagaGCCCCucgGGC-CCGCCUcCAGGcGCc -3'
miRNA:   3'- -GGGG---UGGGG---CCGcGGUGGAcGUCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 28417 0.72 0.238521
Target:  5'- -gCCGgCCCGGCGUC-CUUGCGGcGGCc -3'
miRNA:   3'- ggGGUgGGGCCGCGGuGGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 28443 0.66 0.516248
Target:  5'- uCCCC-CCCCaugaagcggguGGCGCgGggucCCUGCcuGGCa -3'
miRNA:   3'- -GGGGuGGGG-----------CCGCGgU----GGACGucCCG- -5'
33526 3' -65.5 NC_007605.1 + 28508 0.69 0.381604
Target:  5'- cCCCCAUCCC--CGCCGga-GCGGGGCa -3'
miRNA:   3'- -GGGGUGGGGccGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28537 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28589 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28639 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28691 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28741 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28793 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28843 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28895 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28944 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28996 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29046 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.