miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 29098 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29111 0.65 0.559471
Target:  5'- gCCCgACCCCcgGGCGCCcCCaaacuuuguccagaUGUccaGGGGUc -3'
miRNA:   3'- -GGGgUGGGG--CCGCGGuGG--------------ACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29148 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29200 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29250 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29302 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29352 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29404 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29454 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29506 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29556 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29608 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29658 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29710 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29760 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29812 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29862 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29914 0.75 0.161179
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCcccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa--------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29918 0.67 0.471817
Target:  5'- aCCCGgCCCGG-GCCcCCcgGUAuGGGCc -3'
miRNA:   3'- gGGGUgGGGCCgCGGuGGa-CGU-CCCG- -5'
33526 3' -65.5 NC_007605.1 + 29963 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.