miRNA display CGI


Results 101 - 120 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 30015 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30065 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30117 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30167 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30219 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30269 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30321 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30371 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30423 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30473 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30525 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30532 0.67 0.45459
Target:  5'- uCCUC-CCCCGGU-CC-CCaGUAGGGCc -3'
miRNA:   3'- -GGGGuGGGGCCGcGGuGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30575 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30627 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30677 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30729 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30779 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30805 0.68 0.43771
Target:  5'- cCCCCggcagcugGCCCCgaggaGGCGCCcggagugggGCCggucgGCuGGGCu -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGG---------UGGa----CGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30831 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30881 0.67 0.458009
Target:  5'- aCCCAgcggaCCCGGUggGCCACCcgGCcgccccccgagcuccAGGGCc -3'
miRNA:   3'- gGGGUg----GGGCCG--CGGUGGa-CG---------------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.