miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 171466 0.66 0.542778
Target:  5'- gCCCCagggcugACCCCGGCaaacGUgACC--CGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCG----CGgUGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 171126 0.7 0.316859
Target:  5'- cCCCCAgCCCCcccgcacagagcGGCGCUACg-GC-GGGCg -3'
miRNA:   3'- -GGGGU-GGGG------------CCGCGGUGgaCGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 170928 0.66 0.542778
Target:  5'- gCCCCagggcugACCCCGGCaaacGUgACC--CGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCG----CGgUGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 170589 0.7 0.316859
Target:  5'- cCCCCAgCCCCcccgcacagagcGGCGCUACg-GC-GGGCg -3'
miRNA:   3'- -GGGGU-GGGG------------CCGCGGUGgaCGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 170406 0.66 0.542778
Target:  5'- gCCCCagggcugACCCCGGCaaacGUgACC--CGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCG----CGgUGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 170066 0.7 0.316859
Target:  5'- cCCCCAgCCCCcccgcacagagcGGCGCUACg-GC-GGGCg -3'
miRNA:   3'- -GGGGU-GGGG------------CCGCGGUGgaCGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 169868 0.66 0.542778
Target:  5'- gCCCCagggcugACCCCGGCaaacGUgACC--CGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCG----CGgUGGacGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 169529 0.7 0.316859
Target:  5'- cCCCCAgCCCCcccgcacagagcGGCGCUACg-GC-GGGCg -3'
miRNA:   3'- -GGGGU-GGGG------------CCGCGGUGgaCGuCCCG- -5'
33526 3' -65.5 NC_007605.1 + 168943 0.71 0.272473
Target:  5'- gCCgCCGCCCUGGCaUCugCUcCGGGGCc -3'
miRNA:   3'- -GG-GGUGGGGCCGcGGugGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 167645 0.67 0.446105
Target:  5'- -gUCugCCCGGCGCgGauCCaguguagaUGCAGGGUg -3'
miRNA:   3'- ggGGugGGGCCGCGgU--GG--------ACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 167213 0.67 0.445262
Target:  5'- uCCCCGCugCCCGGCcaggGCCAUCUccaccagGCAGGuCa -3'
miRNA:   3'- -GGGGUG--GGGCCG----CGGUGGA-------CGUCCcG- -5'
33526 3' -65.5 NC_007605.1 + 165452 0.67 0.498258
Target:  5'- uUCCCaaGCCCUGGCaccuGCCagugACCUGCGuuGGGa -3'
miRNA:   3'- -GGGG--UGGGGCCG----CGG----UGGACGU--CCCg -5'
33526 3' -65.5 NC_007605.1 + 165139 0.68 0.397141
Target:  5'- cCCUCAuuuccCCCaCGuGUGCCAUCUGguGGcGCg -3'
miRNA:   3'- -GGGGU-----GGG-GC-CGCGGUGGACguCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 163464 0.67 0.480554
Target:  5'- --gCACCCCGGgGaaUACCUGCAuaaguagguGGGCg -3'
miRNA:   3'- gggGUGGGGCCgCg-GUGGACGU---------CCCG- -5'
33526 3' -65.5 NC_007605.1 + 163395 0.66 0.542778
Target:  5'- -gCCACCuuGGCcaccuugGCCugguCCUGCAGGcucuGCu -3'
miRNA:   3'- ggGGUGGggCCG-------CGGu---GGACGUCC----CG- -5'
33526 3' -65.5 NC_007605.1 + 162982 0.68 0.405061
Target:  5'- gCCCACCCCaGC-CCGagaaGCAGGGUc -3'
miRNA:   3'- gGGGUGGGGcCGcGGUgga-CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 162045 0.69 0.389322
Target:  5'- gCCgUACaCCCGGC----CCUGCAGGGCc -3'
miRNA:   3'- -GGgGUG-GGGCCGcgguGGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 161773 0.66 0.550178
Target:  5'- gCCCCGCUggggacagggaCCGaGCGCCGCCUGgaaaaguugugccaCAGGu- -3'
miRNA:   3'- -GGGGUGG-----------GGC-CGCGGUGGAC--------------GUCCcg -5'
33526 3' -65.5 NC_007605.1 + 161289 0.68 0.421194
Target:  5'- gCCCAgCCCCgGGgGCCugCaGCAGGu- -3'
miRNA:   3'- gGGGU-GGGG-CCgCGGugGaCGUCCcg -5'
33526 3' -65.5 NC_007605.1 + 160946 0.68 0.429405
Target:  5'- gCCCgGCuCCCGGaCGCUugaggGCGGGGUg -3'
miRNA:   3'- -GGGgUG-GGGCC-GCGGugga-CGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.