miRNA display CGI


Results 41 - 60 of 368 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 152985 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 152834 0.66 0.552961
Target:  5'- aCCCUgccuggagACCCUGGgGUCuguCUGgGGGGCu -3'
miRNA:   3'- -GGGG--------UGGGGCCgCGGug-GACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 152720 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 152467 0.68 0.43771
Target:  5'- aCCgGCCuCUGGgGCCGCCcgggcUGCcGGGGUc -3'
miRNA:   3'- gGGgUGG-GGCCgCGGUGG-----ACG-UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 151724 0.69 0.366478
Target:  5'- aCCCCAggcUCCCGGCcUCACCcaggaagaGCAGcGGCa -3'
miRNA:   3'- -GGGGU---GGGGCCGcGGUGGa-------CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 151509 0.67 0.471817
Target:  5'- aCCCGCCaggcCUGuGUGUCAgUUUGCAGGGCc -3'
miRNA:   3'- gGGGUGG----GGC-CGCGGU-GGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 151097 0.66 0.534493
Target:  5'- gCCCC-CCUgGGCgGCCgcaGCCUGCcccucGGCg -3'
miRNA:   3'- -GGGGuGGGgCCG-CGG---UGGACGuc---CCG- -5'
33526 3' -65.5 NC_007605.1 + 150810 0.71 0.260743
Target:  5'- uCCCCucgGCCCgCGGaCGCCGCCUcGCcagcccccGGGCc -3'
miRNA:   3'- -GGGG---UGGG-GCC-GCGGUGGA-CGu-------CCCG- -5'
33526 3' -65.5 NC_007605.1 + 150660 0.66 0.516248
Target:  5'- gCCCuCCUCGGCccuguCCACCUGUauguccAGGuGCa -3'
miRNA:   3'- gGGGuGGGGCCGc----GGUGGACG------UCC-CG- -5'
33526 3' -65.5 NC_007605.1 + 150016 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 149916 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 149765 0.66 0.552961
Target:  5'- aCCCUgccuggagACCCUGGgGUCuguCUGgGGGGCu -3'
miRNA:   3'- -GGGG--------UGGGGCCgCGGug-GACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 149652 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 149398 0.68 0.43771
Target:  5'- aCCgGCCuCUGGgGCCGCCcgggcUGCcGGGGUc -3'
miRNA:   3'- gGGgUGG-GGCCgCGGUGG-----ACG-UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 149319 0.67 0.471817
Target:  5'- uCCCCGUCCCaGCGCCAgUgGCucuuAGGGUa -3'
miRNA:   3'- -GGGGUGGGGcCGCGGUgGaCG----UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 148770 0.69 0.377023
Target:  5'- uCCCCGCauuccugcuUUCGGCGCC-CCUGCGGaucccgaugacagcaGGCc -3'
miRNA:   3'- -GGGGUG---------GGGCCGCGGuGGACGUC---------------CCG- -5'
33526 3' -65.5 NC_007605.1 + 146947 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 146847 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 146697 0.66 0.542778
Target:  5'- aCCCUgccugagACCCUGGgGUCuguCUGgGGGGCu -3'
miRNA:   3'- -GGGG-------UGGGGCCgCGGug-GACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 146583 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.