miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 146329 0.68 0.43771
Target:  5'- aCCgGCCuCUGGgGCCGCCcgggcUGCcGGGGUc -3'
miRNA:   3'- gGGgUGG-GGCCgCGGUGG-----ACG-UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 144428 0.71 0.278495
Target:  5'- cCCCCGCCuuGG-Ga-GCCUGUAGGGg -3'
miRNA:   3'- -GGGGUGGggCCgCggUGGACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 143878 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 143778 0.67 0.45459
Target:  5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 143628 0.66 0.552961
Target:  5'- aCCCUgccuggagACCCUGGgGUCuguCUGgGGGGCu -3'
miRNA:   3'- -GGGG--------UGGGGCCgCGGug-GACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 143514 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 143260 0.68 0.43771
Target:  5'- aCCgGCCuCUGGgGCCGCCcgggcUGCcGGGGUc -3'
miRNA:   3'- gGGgUGG-GGCCgCGGUGG-----ACG-UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 143150 0.69 0.365732
Target:  5'- cUCCCaggccggACCCUGGUGCCAg--GCAGGGa -3'
miRNA:   3'- -GGGG-------UGGGGCCGCGGUggaCGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 143020 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142918 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142816 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142714 0.76 0.133235
Target:  5'- uCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142613 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142511 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142409 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142307 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142205 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142103 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 142001 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 141899 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.