Results 81 - 100 of 368 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141797 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141696 | 0.76 | 0.126675 |
Target: 5'- gCCCCGCUCCGGCgggggguGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG-------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141594 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141492 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141390 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141288 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141186 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 141084 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140982 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140880 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140809 | 0.81 | 0.054929 |
Target: 5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3' miRNA: 3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140778 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140710 | 0.71 | 0.260743 |
Target: 5'- aCUUACCCCGG-GCCACCcgGCGGaGCc -3' miRNA: 3'- gGGGUGGGGCCgCGGUGGa-CGUCcCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140677 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140559 | 0.66 | 0.552961 |
Target: 5'- aCCCUgccuggagACCCUGGgGUCuguCUGgGGGGCu -3' miRNA: 3'- -GGGG--------UGGGGCCgCGGug-GACgUCCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140445 | 0.71 | 0.266556 |
Target: 5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3' miRNA: 3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 140191 | 0.68 | 0.43771 |
Target: 5'- aCCgGCCuCUGGgGCCGCCcgggcUGCcGGGGUc -3' miRNA: 3'- gGGgUGG-GGCCgCGGUGG-----ACG-UCCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 137740 | 0.81 | 0.054929 |
Target: 5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3' miRNA: 3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 137641 | 0.67 | 0.45459 |
Target: 5'- aCUUACCCCaGgGCCACCcgGCGGaGCc -3' miRNA: 3'- gGGGUGGGGcCgCGGUGGa-CGUCcCG- -5' |
|||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 137490 | 0.66 | 0.552961 |
Target: 5'- aCCCUgccuggagACCCUGGgGUCuguCUGgGGGGCu -3' miRNA: 3'- -GGGG--------UGGGGCCgCGGug-GACgUCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home