miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 141594 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 140778 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 140880 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 140982 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 141084 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 141186 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 141288 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 141390 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 141492 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 140677 0.76 0.130073
Target:  5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 141696 0.76 0.126675
Target:  5'- gCCCCGCUCCGGCgggggguGCCGgCUGCAgccGGGUc -3'
miRNA:   3'- -GGGGUGGGGCCG-------CGGUgGACGU---CCCG- -5'
33526 3' -65.5 NC_007605.1 + 34238 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 65167 0.86 0.025075
Target:  5'- gCCCACuUuuGGCGCgACCUGCAGGGCg -3'
miRNA:   3'- gGGGUG-GggCCGCGgUGGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 12756 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 15825 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 18894 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 21962 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 25031 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28100 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 31169 0.82 0.04968
Target:  5'- gCCCCGCgCCUGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUG-GGGCCGCGGuGGAcGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.