Results 81 - 100 of 368 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33526 | 3' | -65.5 | NC_007605.1 | + | 38353 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 38478 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 38603 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 38728 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 38853 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 38977 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 39102 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 66346 | 0.72 | 0.243924 |
Target: 5'- gUCCCAUggaaCCGGCGCaGgUUGCGGGGCc -3' miRNA: 3'- -GGGGUGg---GGCCGCGgUgGACGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 101878 | 0.72 | 0.243924 |
Target: 5'- aCCCCACgCCGGCcucgguCCGacuuuuugagauCCUGCAGGGa -3' miRNA: 3'- -GGGGUGgGGCCGc-----GGU------------GGACGUCCCg -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 87824 | 0.74 | 0.185497 |
Target: 5'- nCUCCugCCgCGGgGCCuCCUGCcgcGGGGCc -3' miRNA: 3'- -GGGGugGG-GCCgCGGuGGACG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 142409 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 142511 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 142613 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 142816 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 142918 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 143020 | 0.76 | 0.130073 |
Target: 5'- gCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 142714 | 0.76 | 0.133235 |
Target: 5'- uCCCCGCUCCGGCggggggugGCCGgCUGCAgccGGGUc -3' miRNA: 3'- -GGGGUGGGGCCG--------CGGUgGACGU---CCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 81467 | 0.75 | 0.153006 |
Target: 5'- aCCCGCCCCGGCugggccuauuguccgGCCcugggaGCCaucccugacacaggcUGCGGGGCa -3' miRNA: 3'- gGGGUGGGGCCG---------------CGG------UGG---------------ACGUCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 87795 | 0.75 | 0.157417 |
Target: 5'- cCUCCugCCgCGGgGCCuCCUGCcgcGGGGCu -3' miRNA: 3'- -GGGGugGG-GCCgCGGuGGACG---UCCCG- -5' |
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33526 | 3' | -65.5 | NC_007605.1 | + | 39227 | 0.71 | 0.278495 |
Target: 5'- gCCCCGCUgggcaCCGcuGCGCCGCCgccagGUccuGGGGCa -3' miRNA: 3'- -GGGGUGG-----GGC--CGCGGUGGa----CG---UCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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