miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 137740 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28895 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29098 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 126214 0.66 0.552961
Target:  5'- -aCCGCCCUGuGCuGCCACCUGCc---- -3'
miRNA:   3'- ggGGUGGGGC-CG-CGGUGGACGucccg -5'
33526 3' -65.5 NC_007605.1 + 150016 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 153085 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 159223 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30933 0.75 0.157417
Target:  5'- aCCCCGaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUgGGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 1644 0.74 0.168552
Target:  5'- gCCCCACCCCccgaugccccccgGGgGUCuuuCCUGgGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-------------CCgCGGu--GGACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28793 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 107157 0.74 0.177051
Target:  5'- uCUCCGgCCUGGC-CCG-CUGCAGGGCu -3'
miRNA:   3'- -GGGGUgGGGCCGcGGUgGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 584 0.74 0.168552
Target:  5'- gCCCCACCCCccgaugccccccgGGgGUCuuuCCUGgGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-------------CCgCGGu--GGACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 140809 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28589 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 143878 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29914 0.75 0.161179
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCcccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa--------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28691 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 28996 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 146947 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 156154 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.