miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 30831 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 132360 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 153085 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30933 0.75 0.157417
Target:  5'- aCCCCGaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUgGGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 121107 0.74 0.172957
Target:  5'- -gCCGCCCCGGCGCaCACCccaguuggUGCAuuGGCa -3'
miRNA:   3'- ggGGUGGGGCCGCG-GUGG--------ACGUc-CCG- -5'
33526 3' -65.5 NC_007605.1 + 28691 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29200 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29506 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30015 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30321 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 53 0.7 0.323627
Target:  5'- cCCCCgauGCCCCccgGGgGUCuuuCCUGgGGGGCc -3'
miRNA:   3'- -GGGG---UGGGG---CCgCGGu--GGACgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 11635 0.7 0.303644
Target:  5'- uCCCgGgCCCGGgGCgGCCggagGCagagGGGGCg -3'
miRNA:   3'- -GGGgUgGGGCCgCGgUGGa---CG----UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 132984 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 132734 0.73 0.20346
Target:  5'- gCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 1538 0.73 0.217906
Target:  5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3'
miRNA:   3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 131232 0.72 0.238521
Target:  5'- -gCCGgCCCGGCGUC-CUUGCGGcGGCc -3'
miRNA:   3'- ggGGUgGGGCCGCGGuGGACGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 140710 0.71 0.260743
Target:  5'- aCUUACCCCGG-GCCACCcgGCGGaGCc -3'
miRNA:   3'- gGGGUGGGGCCgCGGUGGa-CGUCcCG- -5'
33526 3' -65.5 NC_007605.1 + 143514 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 158858 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 131870 0.71 0.278495
Target:  5'- gCCaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- gGGg---UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.