miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 3' -65.5 NC_007605.1 + 133234 0.73 0.198832
Target:  5'- cCCCCggagcgccaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- -GGGG------------UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 478 0.73 0.217906
Target:  5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3'
miRNA:   3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 2075 0.73 0.217906
Target:  5'- cCCCCGCcgCCCGcccgccguaGCGCCGCUcugUGCGGGGg -3'
miRNA:   3'- -GGGGUG--GGGC---------CGCGGUGG---ACGUCCCg -5'
33526 3' -65.5 NC_007605.1 + 109422 0.72 0.255034
Target:  5'- aCCgCUACCCCuGgGCgG-CUGCAGGGCa -3'
miRNA:   3'- -GG-GGUGGGGcCgCGgUgGACGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 137376 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 158858 0.71 0.266556
Target:  5'- aCCCCggcggcugGCCCCgaggaGGCGCCAggcGCGGGGCc -3'
miRNA:   3'- -GGGG--------UGGGG-----CCGCGGUggaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 131870 0.71 0.278495
Target:  5'- gCCaggaACCCCGGCuGCCccaggACCUgGCGGcGGCg -3'
miRNA:   3'- gGGg---UGGGGCCG-CGG-----UGGA-CGUC-CCG- -5'
33526 3' -65.5 NC_007605.1 + 30321 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30015 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29506 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 1272 0.7 0.340308
Target:  5'- uCCCCGcCCCCcuugggggcuuggcuGGCGCgGCCg--GGGGCg -3'
miRNA:   3'- -GGGGU-GGGG---------------CCGCGgUGGacgUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 68098 0.69 0.359071
Target:  5'- aUCUC-CCCCGGuCG-CGCUcGCGGGGCa -3'
miRNA:   3'- -GGGGuGGGGCC-GCgGUGGaCGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 59038 0.69 0.373989
Target:  5'- gCCUugCgUGGUGCUGuCCUGCugaAGGGCg -3'
miRNA:   3'- gGGGugGgGCCGCGGU-GGACG---UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 1204 0.69 0.381604
Target:  5'- aCCCCggaGCCCCGG-GUCACguUUGCcGGGGUc -3'
miRNA:   3'- -GGGG---UGGGGCCgCGGUG--GACG-UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 106942 0.68 0.397141
Target:  5'- aCCCACCCCGGCucGCUgaaagagguagcGCCccaggUGCcuauagAGGGCc -3'
miRNA:   3'- gGGGUGGGGCCG--CGG------------UGG-----ACG------UCCCG- -5'
33526 3' -65.5 NC_007605.1 + 153085 0.81 0.054929
Target:  5'- gCCCCACUCCgGGCGCCuCCU-CGGGGCc -3'
miRNA:   3'- -GGGGUGGGG-CCGCGGuGGAcGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 30933 0.75 0.157417
Target:  5'- aCCCCGaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUgGGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 121107 0.74 0.172957
Target:  5'- -gCCGCCCCGGCGCaCACCccaguuggUGCAuuGGCa -3'
miRNA:   3'- ggGGUGGGGCCGCG-GUGG--------ACGUc-CCG- -5'
33526 3' -65.5 NC_007605.1 + 28691 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5'
33526 3' -65.5 NC_007605.1 + 29200 0.74 0.177051
Target:  5'- aCCCCGgaCCCGGCugcagccgGCCACCccccgccggaGCGGGGCa -3'
miRNA:   3'- -GGGGUg-GGGCCG--------CGGUGGa---------CGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.