miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33526 5' -61.3 NC_007605.1 + 101398 0.66 0.685753
Target:  5'- aGUACCg-GCcaguauuUGGCCAGGUCCcGCCg -3'
miRNA:   3'- -UAUGGgaCGu------ACCGGUCCGGGcUGGa -5'
33526 5' -61.3 NC_007605.1 + 67039 0.66 0.685753
Target:  5'- -aGCCCUGCugcgGGUCcgGGGCCUaauGCCUg -3'
miRNA:   3'- uaUGGGACGua--CCGG--UCCGGGc--UGGA- -5'
33526 5' -61.3 NC_007605.1 + 151383 0.66 0.675859
Target:  5'- -aGCCC-GUAccUGGCCAcGGCCagGGCCUc -3'
miRNA:   3'- uaUGGGaCGU--ACCGGU-CCGGg-CUGGA- -5'
33526 5' -61.3 NC_007605.1 + 106310 0.66 0.675859
Target:  5'- --cCCCUGCGUgucGGCCcgcuGuGCCCGcACCg -3'
miRNA:   3'- uauGGGACGUA---CCGGu---C-CGGGC-UGGa -5'
33526 5' -61.3 NC_007605.1 + 40311 0.66 0.669906
Target:  5'- -gGCCCgGCggGGguggggggugcgcucCCAGGCCgGACCc -3'
miRNA:   3'- uaUGGGaCGuaCC---------------GGUCCGGgCUGGa -5'
33526 5' -61.3 NC_007605.1 + 51665 0.66 0.665931
Target:  5'- -gGCCa-GgAUGGCCacggugggGGGCCUGGCCUc -3'
miRNA:   3'- uaUGGgaCgUACCGG--------UCCGGGCUGGA- -5'
33526 5' -61.3 NC_007605.1 + 164916 0.66 0.665931
Target:  5'- --cUCCUGUGUGGCCGccGGCCaGGCUg -3'
miRNA:   3'- uauGGGACGUACCGGU--CCGGgCUGGa -5'
33526 5' -61.3 NC_007605.1 + 38187 0.66 0.665931
Target:  5'- uUACCaaGCAgcguuUGaGCCAGGCugCCGGCCa -3'
miRNA:   3'- uAUGGgaCGU-----AC-CGGUCCG--GGCUGGa -5'
33526 5' -61.3 NC_007605.1 + 153938 0.66 0.655978
Target:  5'- -gGgCCUGCAgguUGGCgGGGCUCagGGCCUc -3'
miRNA:   3'- uaUgGGACGU---ACCGgUCCGGG--CUGGA- -5'
33526 5' -61.3 NC_007605.1 + 158173 0.66 0.655978
Target:  5'- -cACCCcGU-UGGCCAGGCCC--CCg -3'
miRNA:   3'- uaUGGGaCGuACCGGUCCGGGcuGGa -5'
33526 5' -61.3 NC_007605.1 + 8223 0.66 0.646006
Target:  5'- -gAgCCUGCA-GGaCCAGGCCaagguGGCCa -3'
miRNA:   3'- uaUgGGACGUaCC-GGUCCGGg----CUGGa -5'
33526 5' -61.3 NC_007605.1 + 8645 0.66 0.646006
Target:  5'- -gACCCUGCuucucgGGCUGGGgUgGGCCa -3'
miRNA:   3'- uaUGGGACGua----CCGGUCCgGgCUGGa -5'
33526 5' -61.3 NC_007605.1 + 121186 0.66 0.636023
Target:  5'- cUGCCCUGCccacccccacaAUuaaagcgguggGuGCCAGGCCCGugCc -3'
miRNA:   3'- uAUGGGACG-----------UA-----------C-CGGUCCGGGCugGa -5'
33526 5' -61.3 NC_007605.1 + 7708 0.67 0.626038
Target:  5'- -gGCUCUGCAcaGG--AGGCCCGACCc -3'
miRNA:   3'- uaUGGGACGUa-CCggUCCGGGCUGGa -5'
33526 5' -61.3 NC_007605.1 + 51394 0.67 0.616057
Target:  5'- -gACCCUGCugcccagGGCCAGuaugcGCCUGGuCCg -3'
miRNA:   3'- uaUGGGACGua-----CCGGUC-----CGGGCU-GGa -5'
33526 5' -61.3 NC_007605.1 + 133997 0.67 0.606088
Target:  5'- cGUGCCCgggGCGgcgGGUCGGGaCCgGgACCUg -3'
miRNA:   3'- -UAUGGGa--CGUa--CCGGUCC-GGgC-UGGA- -5'
33526 5' -61.3 NC_007605.1 + 96042 0.67 0.596137
Target:  5'- -aAUCUuugGCA-GGUCGGGCCUGGCCa -3'
miRNA:   3'- uaUGGGa--CGUaCCGGUCCGGGCUGGa -5'
33526 5' -61.3 NC_007605.1 + 36817 0.67 0.596137
Target:  5'- -gGCCCUgaGCAUggcGGCCuGGCaCGGCCUu -3'
miRNA:   3'- uaUGGGA--CGUA---CCGGuCCGgGCUGGA- -5'
33526 5' -61.3 NC_007605.1 + 110643 0.67 0.586212
Target:  5'- -cGCCCUGCGcUGGCUGgucuccuucGGCagCGACCUg -3'
miRNA:   3'- uaUGGGACGU-ACCGGU---------CCGg-GCUGGA- -5'
33526 5' -61.3 NC_007605.1 + 131905 0.67 0.586212
Target:  5'- -aGCCCaagGCc-GGCCAGGCCCu-CCUc -3'
miRNA:   3'- uaUGGGa--CGuaCCGGUCCGGGcuGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.