miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33532 3' -61.5 NC_007605.1 + 130557 0.66 0.695939
Target:  5'- uGAGGcugGCAGCCCCCaCCu-----CCCAu -3'
miRNA:   3'- -CUCCa--CGUCGGGGG-GGucaacuGGGU- -5'
33532 3' -61.5 NC_007605.1 + 115300 0.66 0.695939
Target:  5'- aGAGGUcucaGCAGCCgCCUUGGUcucGGCCCc -3'
miRNA:   3'- -CUCCA----CGUCGGgGGGGUCAa--CUGGGu -5'
33532 3' -61.5 NC_007605.1 + 131855 0.66 0.694964
Target:  5'- cAGGUGCAguggagcGCCaggaaCCCCGGcUGcCCCAg -3'
miRNA:   3'- cUCCACGU-------CGGg----GGGGUCaACuGGGU- -5'
33532 3' -61.5 NC_007605.1 + 34918 0.66 0.686165
Target:  5'- -cGGUGuCAGUCCCCCUgcAGcc-GCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGG--UCaacUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 84850 0.66 0.686165
Target:  5'- -cGGUGguuCAGCCaagucagaCUCCAGaUGACCCAa -3'
miRNA:   3'- cuCCAC---GUCGGg-------GGGGUCaACUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 52468 0.66 0.676348
Target:  5'- uGAGG-GCAuGCCCCCCCu-----CCCGg -3'
miRNA:   3'- -CUCCaCGU-CGGGGGGGucaacuGGGU- -5'
33532 3' -61.5 NC_007605.1 + 21575 0.66 0.666498
Target:  5'- cGGGGgGCagagacaggcagGGCCCCCCggCAGcUGGCCCc -3'
miRNA:   3'- -CUCCaCG------------UCGGGGGG--GUCaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 18506 0.66 0.666498
Target:  5'- cGGGGgGCagagacaggcagGGCCCCCCggCAGcUGGCCCc -3'
miRNA:   3'- -CUCCaCG------------UCGGGGGG--GUCaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 12368 0.66 0.666498
Target:  5'- cGGGGgGCagagacaggcagGGCCCCCCggCAGcUGGCCCc -3'
miRNA:   3'- -CUCCaCG------------UCGGGGGG--GUCaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 24644 0.66 0.666498
Target:  5'- cGGGGgGCagagacaggcagGGCCCCCCggCAGcUGGCCCc -3'
miRNA:   3'- -CUCCaCG------------UCGGGGGG--GUCaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 33851 0.66 0.666498
Target:  5'- cGGGGgGCagagacaggcagGGCCCCCCggCAGcUGGCCCc -3'
miRNA:   3'- -CUCCaCG------------UCGGGGGG--GUCaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 16796 0.66 0.666498
Target:  5'- uAGGUGCcuccagAGCcccuuuugCCCCCCuGgcGGCCCAg -3'
miRNA:   3'- cUCCACG------UCG--------GGGGGGuCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 29071 0.66 0.666498
Target:  5'- uAGGUGCcuccagAGCcccuuuugCCCCCCuGgcGGCCCAg -3'
miRNA:   3'- cUCCACG------UCG--------GGGGGGuCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 32140 0.66 0.666498
Target:  5'- uAGGUGCcuccagAGCcccuuuugCCCCCCuGgcGGCCCAg -3'
miRNA:   3'- cUCCACG------UCG--------GGGGGGuCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 19865 0.66 0.666498
Target:  5'- uAGGUGCcuccagAGCcccuuuugCCCCCCuGgcGGCCCAg -3'
miRNA:   3'- cUCCACG------UCG--------GGGGGGuCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 26002 0.66 0.666498
Target:  5'- uAGGUGCcuccagAGCcccuuuugCCCCCCuGgcGGCCCAg -3'
miRNA:   3'- cUCCACG------UCG--------GGGGGGuCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 15437 0.66 0.666498
Target:  5'- cGGGGgGCagagacaggcagGGCCCCCCggCAGcUGGCCCc -3'
miRNA:   3'- -CUCCaCG------------UCGGGGGG--GUCaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 35209 0.66 0.666498
Target:  5'- uAGGUGCcuccagAGCcccuuuugCCCCCCuGgcGGCCCAg -3'
miRNA:   3'- cUCCACG------UCG--------GGGGGGuCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 13727 0.66 0.666498
Target:  5'- uAGGUGCcuccagAGCcccuuuugCCCCCCuGgcGGCCCAg -3'
miRNA:   3'- cUCCACG------UCG--------GGGGGGuCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 27713 0.66 0.666498
Target:  5'- cGGGGgGCagagacaggcagGGCCCCCCggCAGcUGGCCCc -3'
miRNA:   3'- -CUCCaCG------------UCGGGGGG--GUCaACUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.