miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33532 3' -61.5 NC_007605.1 + 81806 1.07 0.001141
Target:  5'- uGAGGUGCAGCCCCCCCAGUUGACCCAa -3'
miRNA:   3'- -CUCCACGUCGGGGGGGUCAACUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 147903 0.75 0.22617
Target:  5'- -cGGUGCGGCUgCCCCG--UGACCCGu -3'
miRNA:   3'- cuCCACGUCGGgGGGGUcaACUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 75916 0.72 0.333237
Target:  5'- gGAGGUGCuGCCCCacagcaugagCCCA--UGACCCu -3'
miRNA:   3'- -CUCCACGuCGGGG----------GGGUcaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 76648 0.72 0.333237
Target:  5'- cAGGggaGGUCCCCCCGGgcUGGCCCAa -3'
miRNA:   3'- cUCCacgUCGGGGGGGUCa-ACUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 28399 0.72 0.355599
Target:  5'- gGGGGUGCAcaCCUCCCAGccGGCCCGg -3'
miRNA:   3'- -CUCCACGUcgGGGGGGUCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 131214 0.72 0.355599
Target:  5'- gGGGGUGCAcaCCUCCCAGccGGCCCGg -3'
miRNA:   3'- -CUCCACGUcgGGGGGGUCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 51328 0.71 0.378997
Target:  5'- gGAGGUGCcaGGgCCCCUUGGcUUGGCCCu -3'
miRNA:   3'- -CUCCACG--UCgGGGGGGUC-AACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 67564 0.7 0.446219
Target:  5'- gGGGGUgGCAGCCCCCuccuCCAGgucgugguacUUGACCa- -3'
miRNA:   3'- -CUCCA-CGUCGGGGG----GGUC----------AACUGGgu -5'
33532 3' -61.5 NC_007605.1 + 22934 0.7 0.455975
Target:  5'- uAGGUGCcuccagagccccuuuGCCCCCCUGGc-GGCCCAg -3'
miRNA:   3'- cUCCACGu--------------CGGGGGGGUCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 76450 0.69 0.482228
Target:  5'- uGGGUGCGGCCUgugaggaUCCAG-UGACCCc -3'
miRNA:   3'- cUCCACGUCGGGg------GGGUCaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 9211 0.69 0.500753
Target:  5'- -uGGUGUAGCCUCCCgUAGUcuuccugGGCCCc -3'
miRNA:   3'- cuCCACGUCGGGGGG-GUCAa------CUGGGu -5'
33532 3' -61.5 NC_007605.1 + 16504 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 31849 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 13435 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 25711 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 22642 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 19573 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 28780 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 63301 0.68 0.563868
Target:  5'- cGGGGUGUAGCCgCCCgGGUcgaggcaggugggGGCCUg -3'
miRNA:   3'- -CUCCACGUCGGgGGGgUCAa------------CUGGGu -5'
33532 3' -61.5 NC_007605.1 + 131746 0.68 0.567771
Target:  5'- -cGGaUGCAGCgaCCCCCAGagGAgcCCCAg -3'
miRNA:   3'- cuCC-ACGUCGg-GGGGGUCaaCU--GGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.