miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33532 3' -61.5 NC_007605.1 + 22170 0.67 0.614036
Target:  5'- aGAGGUcaggggcaccucagGguGCCUCCCCGGgu--CCCAg -3'
miRNA:   3'- -CUCCA--------------CguCGGGGGGGUCaacuGGGU- -5'
33532 3' -61.5 NC_007605.1 + 63301 0.68 0.563868
Target:  5'- cGGGGUGUAGCCgCCCgGGUcgaggcaggugggGGCCUg -3'
miRNA:   3'- -CUCCACGUCGGgGGGgUCAa------------CUGGGu -5'
33532 3' -61.5 NC_007605.1 + 87966 0.67 0.58738
Target:  5'- uGAGGgagcGaCAGCUCCCCCAGUccaccGGCCg- -3'
miRNA:   3'- -CUCCa---C-GUCGGGGGGGUCAa----CUGGgu -5'
33532 3' -61.5 NC_007605.1 + 62936 0.67 0.58738
Target:  5'- cGGGGcUGCuGCCCCCUCc---GGCCCGg -3'
miRNA:   3'- -CUCC-ACGuCGGGGGGGucaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 40324 0.67 0.58738
Target:  5'- uGGGG-GguGCgCUCCCAGgccgGACCCu -3'
miRNA:   3'- -CUCCaCguCGgGGGGGUCaa--CUGGGu -5'
33532 3' -61.5 NC_007605.1 + 115477 0.67 0.597233
Target:  5'- -cGGcauaUGCucuauacccGCCCCUCCGGggGGCCCAg -3'
miRNA:   3'- cuCC----ACGu--------CGGGGGGGUCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 12964 0.67 0.606122
Target:  5'- aGAGGUcagggcaccucagGguGCCUCCCCGGgu--CCCAg -3'
miRNA:   3'- -CUCCA-------------CguCGGGGGGGUCaacuGGGU- -5'
33532 3' -61.5 NC_007605.1 + 16032 0.67 0.614036
Target:  5'- aGAGGUcaggggcaccucagGguGCCUCCCCGGgu--CCCAg -3'
miRNA:   3'- -CUCCA--------------CguCGGGGGGGUCaacuGGGU- -5'
33532 3' -61.5 NC_007605.1 + 19101 0.67 0.614036
Target:  5'- aGAGGUcaggggcaccucagGguGCCUCCCCGGgu--CCCAg -3'
miRNA:   3'- -CUCCA--------------CguCGGGGGGGUCaacuGGGU- -5'
33532 3' -61.5 NC_007605.1 + 31849 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 28780 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 25711 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 147903 0.75 0.22617
Target:  5'- -cGGUGCGGCUgCCCCG--UGACCCGu -3'
miRNA:   3'- cuCCACGUCGGgGGGGUcaACUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 75916 0.72 0.333237
Target:  5'- gGAGGUGCuGCCCCacagcaugagCCCA--UGACCCu -3'
miRNA:   3'- -CUCCACGuCGGGG----------GGGUcaACUGGGu -5'
33532 3' -61.5 NC_007605.1 + 22934 0.7 0.455975
Target:  5'- uAGGUGCcuccagagccccuuuGCCCCCCUGGc-GGCCCAg -3'
miRNA:   3'- cUCCACGu--------------CGGGGGGGUCaaCUGGGU- -5'
33532 3' -61.5 NC_007605.1 + 9211 0.69 0.500753
Target:  5'- -uGGUGUAGCCUCCCgUAGUcuuccugGGCCCc -3'
miRNA:   3'- cuCCACGUCGGGGGG-GUCAa------CUGGGu -5'
33532 3' -61.5 NC_007605.1 + 13435 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 16504 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 19573 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5'
33532 3' -61.5 NC_007605.1 + 22642 0.68 0.548331
Target:  5'- -cGGUGuCAGUCCCCCCugcagccGCCCAg -3'
miRNA:   3'- cuCCAC-GUCGGGGGGGucaac--UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.