miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33532 5' -55 NC_007605.1 + 46680 0.65 0.949477
Target:  5'- gUCAGCGGCU----GAGGGGuuGUUu -3'
miRNA:   3'- gAGUCGUUGGuuacCUCCCCggCAAc -5'
33532 5' -55 NC_007605.1 + 52272 0.66 0.945136
Target:  5'- -gCAGCAugCAGgcucgGGcGcGGGCCGUa- -3'
miRNA:   3'- gaGUCGUugGUUa----CCuC-CCCGGCAac -5'
33532 5' -55 NC_007605.1 + 109082 0.66 0.940557
Target:  5'- uUCGGCcucGGCCAucUGGAGGcGGCCc--- -3'
miRNA:   3'- gAGUCG---UUGGUu-ACCUCC-CCGGcaac -5'
33532 5' -55 NC_007605.1 + 118424 0.66 0.940557
Target:  5'- uUCGGCAccACCAAcUGGAuGGGGCaa-UGg -3'
miRNA:   3'- gAGUCGU--UGGUU-ACCU-CCCCGgcaAC- -5'
33532 5' -55 NC_007605.1 + 137422 0.66 0.935738
Target:  5'- gCUCGGCuGGCCGAgacccgggucUGG-GGGGCCuGUg- -3'
miRNA:   3'- -GAGUCG-UUGGUU----------ACCuCCCCGG-CAac -5'
33532 5' -55 NC_007605.1 + 140491 0.66 0.935738
Target:  5'- gCUCGGCuGGCCGAgacccgggucUGG-GGGGCCuGUg- -3'
miRNA:   3'- -GAGUCG-UUGGUU----------ACCuCCCCGG-CAac -5'
33532 5' -55 NC_007605.1 + 152766 0.66 0.935738
Target:  5'- gCUCGGCuGGCCGAgacccgggucUGG-GGGGCCuGUg- -3'
miRNA:   3'- -GAGUCG-UUGGUU----------ACCuCCCCGG-CAac -5'
33532 5' -55 NC_007605.1 + 155835 0.66 0.935738
Target:  5'- gCUCGGCuGGCCGAgacccgggucUGG-GGGGCCuGUg- -3'
miRNA:   3'- -GAGUCG-UUGGUU----------ACCuCCCCGG-CAac -5'
33532 5' -55 NC_007605.1 + 146629 0.66 0.935738
Target:  5'- gCUCGGCuGGCCGAgacccgggucUGG-GGGGCCuGUg- -3'
miRNA:   3'- -GAGUCG-UUGGUU----------ACCuCCCCGG-CAac -5'
33532 5' -55 NC_007605.1 + 158904 0.66 0.935738
Target:  5'- gCUCGGCuGGCCGAgacccgggucUGG-GGGGCCuGUg- -3'
miRNA:   3'- -GAGUCG-UUGGUU----------ACCuCCCCGG-CAac -5'
33532 5' -55 NC_007605.1 + 5110 0.66 0.935738
Target:  5'- uCUCGGUGGCCu-UGGGGGaGCUGggGg -3'
miRNA:   3'- -GAGUCGUUGGuuACCUCCcCGGCaaC- -5'
33532 5' -55 NC_007605.1 + 143560 0.66 0.935738
Target:  5'- gCUCGGCuGGCCGAgacccgggucUGG-GGGGCCuGUg- -3'
miRNA:   3'- -GAGUCG-UUGGUU----------ACCuCCCCGG-CAac -5'
33532 5' -55 NC_007605.1 + 64692 0.66 0.935243
Target:  5'- uUCAGCgAGCCGggGUGGguguaggggugacGGGGGCUGg-- -3'
miRNA:   3'- gAGUCG-UUGGU--UACC-------------UCCCCGGCaac -5'
33532 5' -55 NC_007605.1 + 149327 0.66 0.930678
Target:  5'- -cCAGC-GCCAGUGGcucuuaggguAGGGGuuGUa- -3'
miRNA:   3'- gaGUCGuUGGUUACC----------UCCCCggCAac -5'
33532 5' -55 NC_007605.1 + 154019 0.66 0.930678
Target:  5'- uCUCGGCGAUgGAgaGGcAGGGaaagagGCCGUUGg -3'
miRNA:   3'- -GAGUCGUUGgUUa-CC-UCCC------CGGCAAC- -5'
33532 5' -55 NC_007605.1 + 11956 0.66 0.925376
Target:  5'- cCUCgGGCGACgCGGUGGA-GGGCUGa-- -3'
miRNA:   3'- -GAG-UCGUUG-GUUACCUcCCCGGCaac -5'
33532 5' -55 NC_007605.1 + 14292 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 17361 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 29637 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 32706 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.