miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33532 5' -55 NC_007605.1 + 61452 0.67 0.919831
Target:  5'- -gCGGCGGCgGgcGUaGAGGGGCCGcUGg -3'
miRNA:   3'- gaGUCGUUGgU--UAcCUCCCCGGCaAC- -5'
33532 5' -55 NC_007605.1 + 51023 0.67 0.901754
Target:  5'- -cCAGgGACU--UGaGGGGGGCUGUUGu -3'
miRNA:   3'- gaGUCgUUGGuuAC-CUCCCCGGCAAC- -5'
33532 5' -55 NC_007605.1 + 14292 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 17361 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 20430 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 23499 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 26568 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 29637 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 32706 0.67 0.919831
Target:  5'- -aCAGCAGCCAAUugucaguucuagGGAGGGGgaCCa--- -3'
miRNA:   3'- gaGUCGUUGGUUA------------CCUCCCC--GGcaac -5'
33532 5' -55 NC_007605.1 + 148478 0.67 0.895253
Target:  5'- aCUCGGgaGACUAAUGGGGGGuGUgGUa- -3'
miRNA:   3'- -GAGUCg-UUGGUUACCUCCC-CGgCAac -5'
33532 5' -55 NC_007605.1 + 68215 0.67 0.895253
Target:  5'- -cCuGUGGCCAA-GGcucaggacguGGGGGCCGUUGa -3'
miRNA:   3'- gaGuCGUUGGUUaCC----------UCCCCGGCAAC- -5'
33532 5' -55 NC_007605.1 + 82996 0.68 0.859342
Target:  5'- gCUCAGCAgagcacagcaaGCCGAUgccGGGGGGGCaucUGg -3'
miRNA:   3'- -GAGUCGU-----------UGGUUA---CCUCCCCGgcaAC- -5'
33532 5' -55 NC_007605.1 + 82121 1.09 0.0038
Target:  5'- cCUCAGCAACCGAUGGAGGGGCCGUUGg -3'
miRNA:   3'- -GAGUCGUUGGUUACCUCCCCGGCAAC- -5'
33532 5' -55 NC_007605.1 + 82281 0.94 0.039217
Target:  5'- aUCAGCcACCAAUGGAGGGGCCGUg- -3'
miRNA:   3'- gAGUCGuUGGUUACCUCCCCGGCAac -5'
33532 5' -55 NC_007605.1 + 95447 0.87 0.108614
Target:  5'- -aCAGCGACCAugaaggggaugaggGUGGGGGGGCUGUUGg -3'
miRNA:   3'- gaGUCGUUGGU--------------UACCUCCCCGGCAAC- -5'
33532 5' -55 NC_007605.1 + 104532 0.75 0.501415
Target:  5'- gCUCAGUGGCCGucUGGcaGGGGGCCGg-- -3'
miRNA:   3'- -GAGUCGUUGGUu-ACC--UCCCCGGCaac -5'
33532 5' -55 NC_007605.1 + 57430 0.7 0.791488
Target:  5'- --gGGCGGCUGAUGGcGGGGGCUGcUGc -3'
miRNA:   3'- gagUCGUUGGUUACC-UCCCCGGCaAC- -5'
33532 5' -55 NC_007605.1 + 57379 0.69 0.818256
Target:  5'- --gGGUAGCUGAUGGcAGGGGCUGcUGc -3'
miRNA:   3'- gagUCGUUGGUUACC-UCCCCGGCaAC- -5'
33532 5' -55 NC_007605.1 + 115674 0.69 0.818256
Target:  5'- --gGGCGGCCAcGUGGaAGGGGuuGUa- -3'
miRNA:   3'- gagUCGUUGGU-UACC-UCCCCggCAac -5'
33532 5' -55 NC_007605.1 + 50346 0.69 0.835259
Target:  5'- ---uGCAGCCGAcGGcGGGGCCGcggUGg -3'
miRNA:   3'- gaguCGUUGGUUaCCuCCCCGGCa--AC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.