miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33534 3' -58.4 NC_007605.1 + 87729 0.66 0.839913
Target:  5'- gUGAGUCCUucggauacuGGGCCuCCUGCcGUGGg- -3'
miRNA:   3'- gACUUAGGG---------UCCGG-GGGUGuCACCag -5'
33534 3' -58.4 NC_007605.1 + 98848 0.66 0.839913
Target:  5'- -gGggUCUCAGGCCUCC-CAGUc--- -3'
miRNA:   3'- gaCuuAGGGUCCGGGGGuGUCAccag -5'
33534 3' -58.4 NC_007605.1 + 50380 0.66 0.839913
Target:  5'- -cGGccGUCCCGGGCCUCUACAGc---- -3'
miRNA:   3'- gaCU--UAGGGUCCGGGGGUGUCaccag -5'
33534 3' -58.4 NC_007605.1 + 104463 0.66 0.839913
Target:  5'- cCUGGAUCCagguGGCCCUU--GGUcGGUCa -3'
miRNA:   3'- -GACUUAGGgu--CCGGGGGugUCA-CCAG- -5'
33534 3' -58.4 NC_007605.1 + 39871 0.66 0.831795
Target:  5'- cCUGGuUCUgGGGCuCCUCugGG-GGUCg -3'
miRNA:   3'- -GACUuAGGgUCCG-GGGGugUCaCCAG- -5'
33534 3' -58.4 NC_007605.1 + 47831 0.66 0.831795
Target:  5'- uUGGcccGUCCCucuuGUCCCUuuCAGUGGUCa -3'
miRNA:   3'- gACU---UAGGGuc--CGGGGGu-GUCACCAG- -5'
33534 3' -58.4 NC_007605.1 + 92609 0.66 0.831795
Target:  5'- -cGAGUCCCGuGGCCaCCCcaauaccugguACAG-GGUa -3'
miRNA:   3'- gaCUUAGGGU-CCGG-GGG-----------UGUCaCCAg -5'
33534 3' -58.4 NC_007605.1 + 79930 0.66 0.823501
Target:  5'- -gGAcaUCCAGGCCCa-ACcGUGGUCa -3'
miRNA:   3'- gaCUuaGGGUCCGGGggUGuCACCAG- -5'
33534 3' -58.4 NC_007605.1 + 164008 0.66 0.822662
Target:  5'- cCUGuggCCCGcguagccGGUCCCCAguGUGGcCa -3'
miRNA:   3'- -GACuuaGGGU-------CCGGGGGUguCACCaG- -5'
33534 3' -58.4 NC_007605.1 + 45095 0.66 0.815038
Target:  5'- gUGGGcCCCgAGGCUCUCGCAGagugggcagaUGGUCc -3'
miRNA:   3'- gACUUaGGG-UCCGGGGGUGUC----------ACCAG- -5'
33534 3' -58.4 NC_007605.1 + 66077 0.66 0.814183
Target:  5'- cCUGAuucagauGUCCCgggacaGGGCCCCCuuuGUGGa- -3'
miRNA:   3'- -GACU-------UAGGG------UCCGGGGGuguCACCag -5'
33534 3' -58.4 NC_007605.1 + 117227 0.66 0.809883
Target:  5'- -aGAcgCgCCAGGCCCugcaguCCccggacaugaaaucaGCGGUGGUCa -3'
miRNA:   3'- gaCUuaG-GGUCCGGG------GG---------------UGUCACCAG- -5'
33534 3' -58.4 NC_007605.1 + 80320 0.66 0.797639
Target:  5'- uUGA--CCC-GGCCCCCGCAGUa--- -3'
miRNA:   3'- gACUuaGGGuCCGGGGGUGUCAccag -5'
33534 3' -58.4 NC_007605.1 + 21918 0.67 0.788718
Target:  5'- -----aCCaCAGGCCCCC-CAGacccgGGUCu -3'
miRNA:   3'- gacuuaGG-GUCCGGGGGuGUCa----CCAG- -5'
33534 3' -58.4 NC_007605.1 + 31124 0.67 0.788718
Target:  5'- -----aCCaCAGGCCCCC-CAGacccgGGUCu -3'
miRNA:   3'- gacuuaGG-GUCCGGGGGuGUCa----CCAG- -5'
33534 3' -58.4 NC_007605.1 + 15780 0.67 0.788718
Target:  5'- -----aCCaCAGGCCCCC-CAGacccgGGUCu -3'
miRNA:   3'- gacuuaGG-GUCCGGGGGuGUCa----CCAG- -5'
33534 3' -58.4 NC_007605.1 + 12711 0.67 0.788718
Target:  5'- -----aCCaCAGGCCCCC-CAGacccgGGUCu -3'
miRNA:   3'- gacuuaGG-GUCCGGGGGuGUCa----CCAG- -5'
33534 3' -58.4 NC_007605.1 + 28055 0.67 0.788718
Target:  5'- -----aCCaCAGGCCCCC-CAGacccgGGUCu -3'
miRNA:   3'- gacuuaGG-GUCCGGGGGuGUCa----CCAG- -5'
33534 3' -58.4 NC_007605.1 + 34193 0.67 0.788718
Target:  5'- -----aCCaCAGGCCCCC-CAGacccgGGUCu -3'
miRNA:   3'- gacuuaGG-GUCCGGGGGuGUCa----CCAG- -5'
33534 3' -58.4 NC_007605.1 + 121215 0.67 0.788718
Target:  5'- gUGggUgCCAGGCCCgugccaaaggCCACGG-GGg- -3'
miRNA:   3'- gACuuAgGGUCCGGG----------GGUGUCaCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.