miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33534 5' -59.4 NC_007605.1 + 162983 0.65 0.820021
Target:  5'- cCCACCCcagcccgagaaGCagggucgGCGGCAGGGGUCccaGGUCCc -3'
miRNA:   3'- -GGUGGG-----------UG-------CGUCGUUCUCGGa--CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 103542 0.65 0.820021
Target:  5'- gUCACCUuaACGCcGCcuGAGCCUugcuggcGuGCCCa -3'
miRNA:   3'- -GGUGGG--UGCGuCGuuCUCGGA-------C-CGGG- -5'
33534 5' -59.4 NC_007605.1 + 91180 0.65 0.820021
Target:  5'- gCCAUCCG-GCGGCcAGGGUuugcagucuccauUUGGCCUg -3'
miRNA:   3'- -GGUGGGUgCGUCGuUCUCG-------------GACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 108204 0.66 0.812463
Target:  5'- uUugCCGCGguGCuguuGGGCCuUGGaCUCg -3'
miRNA:   3'- gGugGGUGCguCGuu--CUCGG-ACC-GGG- -5'
33534 5' -59.4 NC_007605.1 + 21502 0.66 0.812463
Target:  5'- -aGCCCAUGCAGCAcuAGCgUcccGGCgCu -3'
miRNA:   3'- ggUGGGUGCGUCGUucUCGgA---CCGgG- -5'
33534 5' -59.4 NC_007605.1 + 48343 0.66 0.812463
Target:  5'- -gGCCCGgggGCAGCAGuuuGAGaccgccacaucUCUGGCCCa -3'
miRNA:   3'- ggUGGGUg--CGUCGUU---CUC-----------GGACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 12508 0.66 0.812463
Target:  5'- gC-CCCugGCGGagGAGAGCg-GGCUCu -3'
miRNA:   3'- gGuGGGugCGUCg-UUCUCGgaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 143188 0.66 0.807356
Target:  5'- gCCACCCGCuucauggggggggagGCcgccGCAAGGacGCCgGGCCg -3'
miRNA:   3'- -GGUGGGUG---------------CGu---CGUUCU--CGGaCCGGg -5'
33534 5' -59.4 NC_007605.1 + 40373 0.66 0.807356
Target:  5'- gCCACCCGCuucauggggggggagGCcgccGCAAGGacGCCgGGCCg -3'
miRNA:   3'- -GGUGGGUG---------------CGu---CGUUCU--CGGaCCGGg -5'
33534 5' -59.4 NC_007605.1 + 36473 0.66 0.803921
Target:  5'- aCCACCUcaGCGCAGgGAu-GCCUGGaCa -3'
miRNA:   3'- -GGUGGG--UGCGUCgUUcuCGGACCgGg -5'
33534 5' -59.4 NC_007605.1 + 4402 0.66 0.803921
Target:  5'- aCCugCCugGUGGaGAuGGcCCUGGCCg -3'
miRNA:   3'- -GGugGGugCGUCgUUcUC-GGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 112324 0.66 0.803921
Target:  5'- cUCGgCCACaCGGCcGGAGCUccgGGCCUc -3'
miRNA:   3'- -GGUgGGUGcGUCGuUCUCGGa--CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 111443 0.66 0.795232
Target:  5'- -gGCCCACacCAGCGAGccCCUGcGUCCg -3'
miRNA:   3'- ggUGGGUGc-GUCGUUCucGGAC-CGGG- -5'
33534 5' -59.4 NC_007605.1 + 12066 0.66 0.795232
Target:  5'- aCCGagCCAUGCAGCGguuGGGCCgaGGCg- -3'
miRNA:   3'- -GGUg-GGUGCGUCGUu--CUCGGa-CCGgg -5'
33534 5' -59.4 NC_007605.1 + 113549 0.66 0.795232
Target:  5'- cCgGCCUcCGCGGCcccGGCCUccgcGGCCCc -3'
miRNA:   3'- -GgUGGGuGCGUCGuucUCGGA----CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 113519 0.66 0.795232
Target:  5'- cCgGCCUcCGCGGCcccGGCCUccgcGGCCCc -3'
miRNA:   3'- -GgUGGGuGCGUCGuucUCGGA----CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 8610 0.66 0.795232
Target:  5'- -gACCC-UGCAGgAGGGGaCCUGGgaCCCc -3'
miRNA:   3'- ggUGGGuGCGUCgUUCUC-GGACC--GGG- -5'
33534 5' -59.4 NC_007605.1 + 61122 0.66 0.795232
Target:  5'- uCCGCgCGCGCcGUuu-GGCC-GGCCCu -3'
miRNA:   3'- -GGUGgGUGCGuCGuucUCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 46016 0.66 0.795232
Target:  5'- cCCGCCCGCugaaggGCGGaCAGGGGgggauCCUGGUaaCCu -3'
miRNA:   3'- -GGUGGGUG------CGUC-GUUCUC-----GGACCG--GG- -5'
33534 5' -59.4 NC_007605.1 + 119046 0.66 0.795232
Target:  5'- gCGCCCcauCGUucuacGCAGGAcucgGCCUGGUCUc -3'
miRNA:   3'- gGUGGGu--GCGu----CGUUCU----CGGACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.