miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33534 5' -59.4 NC_007605.1 + 84426 1.12 0.000952
Target:  5'- aCCACCCACGCAGCAAGAGCCUGGCCCc -3'
miRNA:   3'- -GGUGGGUGCGUCGUUCUCGGACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 126527 0.81 0.130589
Target:  5'- uCUGCCCACuCuGCGAGAGCCUcggGGCCCa -3'
miRNA:   3'- -GGUGGGUGcGuCGUUCUCGGA---CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 6692 0.77 0.223779
Target:  5'- cUCACCCAagaaaGCGGUGAcAGCCUGGCCg -3'
miRNA:   3'- -GGUGGGUg----CGUCGUUcUCGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 106286 0.77 0.229136
Target:  5'- uCCACCCugGCGGCGgacaAGAGUCUgcGGUCUc -3'
miRNA:   3'- -GGUGGGugCGUCGU----UCUCGGA--CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 60552 0.76 0.269721
Target:  5'- cUCACCCGagaccagaaaGCGGCGGGuGGCCaGGCCCa -3'
miRNA:   3'- -GGUGGGUg---------CGUCGUUC-UCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 117798 0.76 0.27597
Target:  5'- gCCGCCCugGCccgGGCAGcGGCCgggaacggcucaUGGCCCu -3'
miRNA:   3'- -GGUGGGugCG---UCGUUcUCGG------------ACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 43670 0.76 0.27597
Target:  5'- -gACCUGCGCGGCGGGGGCauuGCCCa -3'
miRNA:   3'- ggUGGGUGCGUCGUUCUCGgacCGGG- -5'
33534 5' -59.4 NC_007605.1 + 160834 0.76 0.288815
Target:  5'- uCCACCCA-GCAGCAGcccGGCCgaGGCCUg -3'
miRNA:   3'- -GGUGGGUgCGUCGUUc--UCGGa-CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 158815 0.75 0.302124
Target:  5'- cCCAUCCG-GgGGCAGG-GCCUGGCCg -3'
miRNA:   3'- -GGUGGGUgCgUCGUUCuCGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 39598 0.75 0.315901
Target:  5'- -aGCCC-CGUAGcCGGGAGUgUGGCCCc -3'
miRNA:   3'- ggUGGGuGCGUC-GUUCUCGgACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 8848 0.75 0.322966
Target:  5'- gCCAguCCCAugugcuCGCucuGCGAGGGCCgGGCCCc -3'
miRNA:   3'- -GGU--GGGU------GCGu--CGUUCUCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 9466 0.74 0.337446
Target:  5'- aCUACCagACGCuguGCAccaacuuuaGGAGCCUGGCCa -3'
miRNA:   3'- -GGUGGg-UGCGu--CGU---------UCUCGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 100580 0.74 0.337446
Target:  5'- gCCGCCCAUcCAGagauuGGAGCCUGGCa- -3'
miRNA:   3'- -GGUGGGUGcGUCgu---UCUCGGACCGgg -5'
33534 5' -59.4 NC_007605.1 + 121190 0.74 0.351634
Target:  5'- cCUGCCCACccccacaauuaaaGCGGUggGuGCCaGGCCCg -3'
miRNA:   3'- -GGUGGGUG-------------CGUCGuuCuCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 73311 0.74 0.352393
Target:  5'- uCCACUgGCccCGGCAGGuGGCCUGGCCg -3'
miRNA:   3'- -GGUGGgUGc-GUCGUUC-UCGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 70203 0.74 0.363131
Target:  5'- gCCGCCCuagaggaacuccaGCGGCGGGA-CCUGGCCa -3'
miRNA:   3'- -GGUGGGug-----------CGUCGUUCUcGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 11314 0.74 0.367803
Target:  5'- cUCACaCCAUGgGGCugGAGAGCCUggaacgGGCCCu -3'
miRNA:   3'- -GGUG-GGUGCgUCG--UUCUCGGA------CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 50395 0.74 0.374887
Target:  5'- gCCGCCaGCGCccccguggccuuuGGCAcGGGCCUGGCaCCc -3'
miRNA:   3'- -GGUGGgUGCG-------------UCGUuCUCGGACCG-GG- -5'
33534 5' -59.4 NC_007605.1 + 83872 0.73 0.383669
Target:  5'- -gGCCC-CGCGGCAGGAgGCCccacggcaggaGGCCCa -3'
miRNA:   3'- ggUGGGuGCGUCGUUCU-CGGa----------CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 83798 0.73 0.383669
Target:  5'- -gGCCC-CGCGGCAGGAgGCCccgcggcaggaGGCCCg -3'
miRNA:   3'- ggUGGGuGCGUCGUUCU-CGGa----------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.