miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33534 5' -59.4 NC_007605.1 + 440 0.69 0.61323
Target:  5'- uCCACCgCcCGCAGCccccGGAGCCcgcGGaCCCc -3'
miRNA:   3'- -GGUGG-GuGCGUCGu---UCUCGGa--CC-GGG- -5'
33534 5' -59.4 NC_007605.1 + 487 0.73 0.422697
Target:  5'- cCCGCCCGcCGUAGCGccgcucugugcgggGGGGCUggggGGCCg -3'
miRNA:   3'- -GGUGGGU-GCGUCGU--------------UCUCGGa---CCGGg -5'
33534 5' -59.4 NC_007605.1 + 1024 0.73 0.422697
Target:  5'- cCCGCCCGcCGUAGCGccgcucugugcgggGGGGCUggggGGCCg -3'
miRNA:   3'- -GGUGGGU-GCGUCGU--------------UCUCGGa---CCGGg -5'
33534 5' -59.4 NC_007605.1 + 1500 0.69 0.61323
Target:  5'- uCCACCgCcCGCAGCccccGGAGCCcgcGGaCCCc -3'
miRNA:   3'- -GGUGG-GuGCGUCGu---UCUCGGa--CC-GGG- -5'
33534 5' -59.4 NC_007605.1 + 1547 0.73 0.422697
Target:  5'- cCCGCCCGcCGUAGCGccgcucugugcgggGGGGCUggggGGCCg -3'
miRNA:   3'- -GGUGGGU-GCGUCGU--------------UCUCGGa---CCGGg -5'
33534 5' -59.4 NC_007605.1 + 1864 0.67 0.749872
Target:  5'- -gACCCACGCuccGCGcucGGCCUagacccggGGCCCc -3'
miRNA:   3'- ggUGGGUGCGu--CGUuc-UCGGA--------CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 2037 0.69 0.61323
Target:  5'- uCCACCgCcCGCAGCccccGGAGCCcgcGGaCCCc -3'
miRNA:   3'- -GGUGG-GuGCGUCGu---UCUCGGa--CC-GGG- -5'
33534 5' -59.4 NC_007605.1 + 2084 0.73 0.422697
Target:  5'- cCCGCCCGcCGUAGCGccgcucugugcgggGGGGCUggggGGCCg -3'
miRNA:   3'- -GGUGGGU-GCGUCGU--------------UCUCGGa---CCGGg -5'
33534 5' -59.4 NC_007605.1 + 2286 0.67 0.749872
Target:  5'- uCCGgCCAgGUGGCGGcGGGCUuccagagGGCCCu -3'
miRNA:   3'- -GGUgGGUgCGUCGUU-CUCGGa------CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 2965 0.68 0.692325
Target:  5'- gCC-CCUACGCcgaaaguucaugGGCAcaGGGGCCgugcagacGGCCCu -3'
miRNA:   3'- -GGuGGGUGCG------------UCGU--UCUCGGa-------CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 4402 0.66 0.803921
Target:  5'- aCCugCCugGUGGaGAuGGcCCUGGCCg -3'
miRNA:   3'- -GGugGGugCGUCgUUcUC-GGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 4807 0.72 0.442645
Target:  5'- -aGCCCACGCcgguuGGUGacAGAGCCUGaCCCa -3'
miRNA:   3'- ggUGGGUGCG-----UCGU--UCUCGGACcGGG- -5'
33534 5' -59.4 NC_007605.1 + 5418 0.67 0.730036
Target:  5'- gCCugCCACuuccaCAGCAauggcacGGAuGCCUGGCgCu -3'
miRNA:   3'- -GGugGGUGc----GUCGU-------UCU-CGGACCGgG- -5'
33534 5' -59.4 NC_007605.1 + 6692 0.77 0.223779
Target:  5'- cUCACCCAagaaaGCGGUGAcAGCCUGGCCg -3'
miRNA:   3'- -GGUGGGUg----CGUCGUUcUCGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 7532 0.67 0.740475
Target:  5'- -aAUCUggGCAGCcAGAGCCagccgGGUCCg -3'
miRNA:   3'- ggUGGGugCGUCGuUCUCGGa----CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 7657 0.68 0.681537
Target:  5'- gCCGCUCcuuUGCGGCAucaccguGGAGCCgGGCUUc -3'
miRNA:   3'- -GGUGGGu--GCGUCGU-------UCUCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 8610 0.66 0.795232
Target:  5'- -gACCC-UGCAGgAGGGGaCCUGGgaCCCc -3'
miRNA:   3'- ggUGGGuGCGUCgUUCUC-GGACC--GGG- -5'
33534 5' -59.4 NC_007605.1 + 8848 0.75 0.322966
Target:  5'- gCCAguCCCAugugcuCGCucuGCGAGGGCCgGGCCCc -3'
miRNA:   3'- -GGU--GGGU------GCGu--CGUUCUCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 8938 0.67 0.73953
Target:  5'- gUCAugUCCACGCAGCgGAGGGaccCCUaugugaucucgggGGCCCg -3'
miRNA:   3'- -GGU--GGGUGCGUCG-UUCUC---GGA-------------CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 9466 0.74 0.337446
Target:  5'- aCUACCagACGCuguGCAccaacuuuaGGAGCCUGGCCa -3'
miRNA:   3'- -GGUGGg-UGCGu--CGU---------UCUCGGACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.