miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33534 5' -59.4 NC_007605.1 + 13134 0.7 0.544553
Target:  5'- gCCucuCCCuCGCGGagAGGGGCCUcuuugGGCCCu -3'
miRNA:   3'- -GGu--GGGuGCGUCg-UUCUCGGA-----CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 123350 0.72 0.478555
Target:  5'- cCCACCauuagcCGguGCAcagcccuGuGCCUGGCCCu -3'
miRNA:   3'- -GGUGGgu----GCguCGUu------CuCGGACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 10675 0.71 0.49704
Target:  5'- uCCACCC-CGCccucaAGCGuccgGGAGCCgggcGGCUCg -3'
miRNA:   3'- -GGUGGGuGCG-----UCGU----UCUCGGa---CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 91737 0.71 0.49704
Target:  5'- -gGCCCGCa-GGCGcGGGGCCUcGGCCCu -3'
miRNA:   3'- ggUGGGUGcgUCGU-UCUCGGA-CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 99543 0.71 0.49704
Target:  5'- uCCAUgaCCACGCAauuaGAGuGCCgGGCCCg -3'
miRNA:   3'- -GGUG--GGUGCGUcg--UUCuCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 159706 0.71 0.49704
Target:  5'- aC-CCCGcCGCAG-AAGAGCCgcuccgUGGCCCc -3'
miRNA:   3'- gGuGGGU-GCGUCgUUCUCGG------ACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 66885 0.71 0.53396
Target:  5'- aCGCCUACGCAG-AGGccaucauGGCCgacgaGGCCCu -3'
miRNA:   3'- gGUGGGUGCGUCgUUC-------UCGGa----CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 74970 0.71 0.53492
Target:  5'- aCAaaCAgGCuGGCGAcAGCCUGGCCCu -3'
miRNA:   3'- gGUggGUgCG-UCGUUcUCGGACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 149642 0.71 0.53492
Target:  5'- cCCGCUCugGguGCAGGAGCgUGucaGCUg -3'
miRNA:   3'- -GGUGGGugCguCGUUCUCGgAC---CGGg -5'
33534 5' -59.4 NC_007605.1 + 51673 0.72 0.460415
Target:  5'- -uGgCCACGguG-GGGGGCCUGGCCUc -3'
miRNA:   3'- ggUgGGUGCguCgUUCUCGGACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 75157 0.72 0.451482
Target:  5'- aCCGCCUcccgugguGCgGCAGCcGGAGCacucugGGCCCa -3'
miRNA:   3'- -GGUGGG--------UG-CGUCGuUCUCGga----CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 4807 0.72 0.442645
Target:  5'- -aGCCCACGCcgguuGGUGacAGAGCCUGaCCCa -3'
miRNA:   3'- ggUGGGUGCG-----UCGU--UCUCGGACcGGG- -5'
33534 5' -59.4 NC_007605.1 + 106286 0.77 0.229136
Target:  5'- uCCACCCugGCGGCGgacaAGAGUCUgcGGUCUc -3'
miRNA:   3'- -GGUGGGugCGUCGU----UCUCGGA--CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 60552 0.76 0.269721
Target:  5'- cUCACCCGagaccagaaaGCGGCGGGuGGCCaGGCCCa -3'
miRNA:   3'- -GGUGGGUg---------CGUCGUUC-UCGGaCCGGG- -5'
33534 5' -59.4 NC_007605.1 + 160834 0.76 0.288815
Target:  5'- uCCACCCA-GCAGCAGcccGGCCgaGGCCUg -3'
miRNA:   3'- -GGUGGGUgCGUCGUUc--UCGGa-CCGGG- -5'
33534 5' -59.4 NC_007605.1 + 158815 0.75 0.302124
Target:  5'- cCCAUCCG-GgGGCAGG-GCCUGGCCg -3'
miRNA:   3'- -GGUGGGUgCgUCGUUCuCGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 73311 0.74 0.352393
Target:  5'- uCCACUgGCccCGGCAGGuGGCCUGGCCg -3'
miRNA:   3'- -GGUGGgUGc-GUCGUUC-UCGGACCGGg -5'
33534 5' -59.4 NC_007605.1 + 50395 0.74 0.374887
Target:  5'- gCCGCCaGCGCccccguggccuuuGGCAcGGGCCUGGCaCCc -3'
miRNA:   3'- -GGUGGgUGCG-------------UCGUuCUCGGACCG-GG- -5'
33534 5' -59.4 NC_007605.1 + 121929 0.73 0.408305
Target:  5'- gCCAcCCCugGguGgAucuuGAGCUUGGCCUg -3'
miRNA:   3'- -GGU-GGGugCguCgUu---CUCGGACCGGG- -5'
33534 5' -59.4 NC_007605.1 + 65521 0.72 0.442645
Target:  5'- -gGCCuCGgGguGCAGG-GCCUGGCCg -3'
miRNA:   3'- ggUGG-GUgCguCGUUCuCGGACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.