miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33538 3' -58.6 NC_007605.1 + 151406 0.66 0.837466
Target:  5'- gGCCUCGuaGGccGAgACGGGCAgCCGg -3'
miRNA:   3'- -CGGAGUcgCCa-CUgUGUCCGUgGGUg -5'
33538 3' -58.6 NC_007605.1 + 16867 0.66 0.836659
Target:  5'- aGCCUCucagacuacaAGCuG-GACACaguagccAGGCACCUACu -3'
miRNA:   3'- -CGGAG----------UCGcCaCUGUG-------UCCGUGGGUG- -5'
33538 3' -58.6 NC_007605.1 + 144391 0.66 0.829317
Target:  5'- uGCCUCcuGUGGUGGCAgAgcuuGGCccuggGCCCAa -3'
miRNA:   3'- -CGGAGu-CGCCACUGUgU----CCG-----UGGGUg -5'
33538 3' -58.6 NC_007605.1 + 159049 0.66 0.829317
Target:  5'- uGCCUUc-UGGUGGgGCAGcGUACCUGCg -3'
miRNA:   3'- -CGGAGucGCCACUgUGUC-CGUGGGUG- -5'
33538 3' -58.6 NC_007605.1 + 47127 0.66 0.829317
Target:  5'- uGUCUCGGUcuGGUcaagucgagGAUACGGGCGCCagaguCACa -3'
miRNA:   3'- -CGGAGUCG--CCA---------CUGUGUCCGUGG-----GUG- -5'
33538 3' -58.6 NC_007605.1 + 151547 0.66 0.829317
Target:  5'- cGCaCUCAgGUGGacUGGC-UAGGCACCCu- -3'
miRNA:   3'- -CG-GAGU-CGCC--ACUGuGUCCGUGGGug -5'
33538 3' -58.6 NC_007605.1 + 84680 0.66 0.826838
Target:  5'- uCUUCAcCGGUGACcUAGGCauagagagugaugaGCCCGCu -3'
miRNA:   3'- cGGAGUcGCCACUGuGUCCG--------------UGGGUG- -5'
33538 3' -58.6 NC_007605.1 + 168224 0.66 0.820995
Target:  5'- aUCUCGGCGGUGGaaacCGGGgACgCCAg -3'
miRNA:   3'- cGGAGUCGCCACUgu--GUCCgUG-GGUg -5'
33538 3' -58.6 NC_007605.1 + 147445 0.66 0.820995
Target:  5'- uGCCUUAGCaGUGugGCccuuuauuguGGCAUCCu- -3'
miRNA:   3'- -CGGAGUCGcCACugUGu---------CCGUGGGug -5'
33538 3' -58.6 NC_007605.1 + 57425 0.66 0.820995
Target:  5'- aGCCcgGGCGGcugaUGGCGgGGGCugCUGCu -3'
miRNA:   3'- -CGGagUCGCC----ACUGUgUCCGugGGUG- -5'
33538 3' -58.6 NC_007605.1 + 107981 0.66 0.820995
Target:  5'- cGCaUCGGCGG-GGCACGGcuGCagGCCCAg -3'
miRNA:   3'- -CGgAGUCGCCaCUGUGUC--CG--UGGGUg -5'
33538 3' -58.6 NC_007605.1 + 49122 0.66 0.812508
Target:  5'- uGCCaccuggUgAGCGGUG-UGCGGGCugCCGu -3'
miRNA:   3'- -CGG------AgUCGCCACuGUGUCCGugGGUg -5'
33538 3' -58.6 NC_007605.1 + 105286 0.66 0.803863
Target:  5'- uGCCaUAGCGGUGA---AGG-GCCCGCa -3'
miRNA:   3'- -CGGaGUCGCCACUgugUCCgUGGGUG- -5'
33538 3' -58.6 NC_007605.1 + 59568 0.66 0.803863
Target:  5'- uGCCguggggCGGUGGUGACAgGucccGGCugGCCCGg -3'
miRNA:   3'- -CGGa-----GUCGCCACUGUgU----CCG--UGGGUg -5'
33538 3' -58.6 NC_007605.1 + 137044 0.66 0.80299
Target:  5'- aGCCUCcaccccCGG-GcACACAGGCccccgaaGCCCACu -3'
miRNA:   3'- -CGGAGuc----GCCaC-UGUGUCCG-------UGGGUG- -5'
33538 3' -58.6 NC_007605.1 + 8126 0.66 0.795954
Target:  5'- aCCUCAGCcgcugcaugcacgaGGcgcuguacaccgggcUGGCGCAGGCGCUgCGCg -3'
miRNA:   3'- cGGAGUCG--------------CC---------------ACUGUGUCCGUGG-GUG- -5'
33538 3' -58.6 NC_007605.1 + 131894 0.66 0.795069
Target:  5'- aCCU-GGCGGcGGCGCAgcGGUGCCCAg -3'
miRNA:   3'- cGGAgUCGCCaCUGUGU--CCGUGGGUg -5'
33538 3' -58.6 NC_007605.1 + 132019 0.66 0.795069
Target:  5'- aCCU-GGCGGcGGCGCAgcGGUGCCCAg -3'
miRNA:   3'- cGGAgUCGCCaCUGUGU--CCGUGGGUg -5'
33538 3' -58.6 NC_007605.1 + 132644 0.66 0.795069
Target:  5'- aCCU-GGCGGcGGCGCAgcGGUGCCCAg -3'
miRNA:   3'- cGGAgUCGCCaCUGUGU--CCGUGGGUg -5'
33538 3' -58.6 NC_007605.1 + 132394 0.66 0.795069
Target:  5'- aCCU-GGCGGcGGCGCAgcGGUGCCCAg -3'
miRNA:   3'- cGGAgUCGCCaCUGUGU--CCGUGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.