miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33538 5' -60.5 NC_007605.1 + 105069 0.66 0.726449
Target:  5'- aGAGUugggcaaaccccgGGGGCCgc-GCuCUCCCACCc-- -3'
miRNA:   3'- -CUCA-------------CCCCGGauaCG-GAGGGUGGcua -5'
33538 5' -60.5 NC_007605.1 + 49374 0.66 0.70798
Target:  5'- cGGGcUGGuGGCCUuUGCCUUCU-CCGAg -3'
miRNA:   3'- -CUC-ACC-CCGGAuACGGAGGGuGGCUa -5'
33538 5' -60.5 NC_007605.1 + 111056 0.66 0.698167
Target:  5'- gGAGUcguuGGGCCUG-GCCaCCCGCCGc- -3'
miRNA:   3'- -CUCAc---CCCGGAUaCGGaGGGUGGCua -5'
33538 5' -60.5 NC_007605.1 + 131534 0.66 0.698167
Target:  5'- aGGGUGGGGCCagcgGaCCgcaCCCACCc-- -3'
miRNA:   3'- -CUCACCCCGGaua-C-GGa--GGGUGGcua -5'
33538 5' -60.5 NC_007605.1 + 65994 0.66 0.698167
Target:  5'- ---gGGGGCC-GUGUCUCCUGCCu-- -3'
miRNA:   3'- cucaCCCCGGaUACGGAGGGUGGcua -5'
33538 5' -60.5 NC_007605.1 + 22354 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 16216 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 13147 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 31561 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 28492 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 19285 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 25423 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 34630 0.66 0.696197
Target:  5'- gGAGaGGGGCCUcuuuggGCCcucaaguccagcCCCACCGAg -3'
miRNA:   3'- -CUCaCCCCGGAua----CGGa-----------GGGUGGCUa -5'
33538 5' -60.5 NC_007605.1 + 95721 0.66 0.6883
Target:  5'- -uGUGGGGCagca-CCUCCCGuCCGGUc -3'
miRNA:   3'- cuCACCCCGgauacGGAGGGU-GGCUA- -5'
33538 5' -60.5 NC_007605.1 + 16032 0.66 0.685331
Target:  5'- aGAGgucaGGGGCaccucaggGUGCCUCCCcgggucccaggccaGCCGGa -3'
miRNA:   3'- -CUCa---CCCCGga------UACGGAGGG--------------UGGCUa -5'
33538 5' -60.5 NC_007605.1 + 19101 0.66 0.685331
Target:  5'- aGAGgucaGGGGCaccucaggGUGCCUCCCcgggucccaggccaGCCGGa -3'
miRNA:   3'- -CUCa---CCCCGga------UACGGAGGG--------------UGGCUa -5'
33538 5' -60.5 NC_007605.1 + 22170 0.66 0.685331
Target:  5'- aGAGgucaGGGGCaccucaggGUGCCUCCCcgggucccaggccaGCCGGa -3'
miRNA:   3'- -CUCa---CCCCGga------UACGGAGGG--------------UGGCUa -5'
33538 5' -60.5 NC_007605.1 + 28308 0.66 0.685331
Target:  5'- aGAGgucaGGGGCaccucaggGUGCCUCCCcgggucccaggccaGCCGGa -3'
miRNA:   3'- -CUCa---CCCCGga------UACGGAGGG--------------UGGCUa -5'
33538 5' -60.5 NC_007605.1 + 34446 0.66 0.685331
Target:  5'- aGAGgucaGGGGCaccucaggGUGCCUCCCcgggucccaggccaGCCGGa -3'
miRNA:   3'- -CUCa---CCCCGga------UACGGAGGG--------------UGGCUa -5'
33538 5' -60.5 NC_007605.1 + 31377 0.66 0.685331
Target:  5'- aGAGgucaGGGGCaccucaggGUGCCUCCCcgggucccaggccaGCCGGa -3'
miRNA:   3'- -CUCa---CCCCGga------UACGGAGGG--------------UGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.