miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33541 3' -56.7 NC_007605.1 + 153769 0.66 0.92144
Target:  5'- gCCacaaaCAGGCUCCGggugGUguGGGcgGCCa -3'
miRNA:   3'- gGGg----GUCCGAGGUa---UGguCCCuaUGG- -5'
33541 3' -56.7 NC_007605.1 + 131585 0.66 0.92144
Target:  5'- aUCCCCGGaugaGCUCCAggACCAGGcaaGCg -3'
miRNA:   3'- -GGGGGUC----CGAGGUa-UGGUCCcuaUGg -5'
33541 3' -56.7 NC_007605.1 + 159279 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 137796 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 156210 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 150072 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 100295 0.66 0.92144
Target:  5'- gCCCCaaGGGC-CC---CCAGGG-UGCCu -3'
miRNA:   3'- gGGGG--UCCGaGGuauGGUCCCuAUGG- -5'
33541 3' -56.7 NC_007605.1 + 140865 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 147003 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 95002 0.66 0.92144
Target:  5'- aCUCCAGGCgagCCAgGC--GGGcgGCCa -3'
miRNA:   3'- gGGGGUCCGa--GGUaUGguCCCuaUGG- -5'
33541 3' -56.7 NC_007605.1 + 153141 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 143934 0.66 0.92144
Target:  5'- cCCCCCggAGGgaCCGggugcugggACCucGGGUGCCc -3'
miRNA:   3'- -GGGGG--UCCgaGGUa--------UGGucCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 140713 0.66 0.915878
Target:  5'- -gUCCGGGUUCCGgcccuggaGCuCGGGGGgcgGCCg -3'
miRNA:   3'- ggGGGUCCGAGGUa-------UG-GUCCCUa--UGG- -5'
33541 3' -56.7 NC_007605.1 + 119170 0.66 0.915878
Target:  5'- aCCCCCAuGGCugUCCGUGuuGuuGGGGUAa- -3'
miRNA:   3'- -GGGGGU-CCG--AGGUAUggU--CCCUAUgg -5'
33541 3' -56.7 NC_007605.1 + 74733 0.66 0.915878
Target:  5'- aCCCCGGGgUCCAgUGCUuGGGccuucuCCu -3'
miRNA:   3'- gGGGGUCCgAGGU-AUGGuCCCuau---GG- -5'
33541 3' -56.7 NC_007605.1 + 111433 0.66 0.915878
Target:  5'- aCCCCCucuGGGC-CCAcACCAGcGA-GCCc -3'
miRNA:   3'- -GGGGG---UCCGaGGUaUGGUCcCUaUGG- -5'
33541 3' -56.7 NC_007605.1 + 121219 0.66 0.915878
Target:  5'- gUgCCAGGC-CCGUGCCaaaggccacGGGGGcGCUg -3'
miRNA:   3'- gGgGGUCCGaGGUAUGG---------UCCCUaUGG- -5'
33541 3' -56.7 NC_007605.1 + 134347 0.66 0.912431
Target:  5'- aCCCCCAGGcCUCCAUcagcucucuuuuccCCGGGcugguuuUGCUg -3'
miRNA:   3'- -GGGGGUCC-GAGGUAu-------------GGUCCcu-----AUGG- -5'
33541 3' -56.7 NC_007605.1 + 50251 0.66 0.910088
Target:  5'- gCgCCAGGCUCCGaGCCGGa-AUGCa -3'
miRNA:   3'- gGgGGUCCGAGGUaUGGUCccUAUGg -5'
33541 3' -56.7 NC_007605.1 + 140677 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.