miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33541 3' -56.7 NC_007605.1 + 88332 1.14 0.001412
Target:  5'- cCCCCCAGGCUCCAUACCAGGGAUACCa -3'
miRNA:   3'- -GGGGGUCCGAGGUAUGGUCCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 88371 1.14 0.001412
Target:  5'- cCCCCCAGGCUCCAUACCAGGGAUACCa -3'
miRNA:   3'- -GGGGGUCCGAGGUAUGGUCCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 88293 1.11 0.002434
Target:  5'- cUCCCCAGGCUCCAUACCAGGGAUACCa -3'
miRNA:   3'- -GGGGGUCCGAGGUAUGGUCCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 131407 0.78 0.307394
Target:  5'- aCCCCUAGGC-CUGUGCCauGGGGAcccccUGCCa -3'
miRNA:   3'- -GGGGGUCCGaGGUAUGG--UCCCU-----AUGG- -5'
33541 3' -56.7 NC_007605.1 + 35254 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 32185 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 29116 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 26047 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 22978 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 19910 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 16841 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 13772 0.78 0.319354
Target:  5'- aCCCCCGGGCgcccccaaacuuugUCCAgauguCCAGGGGUcCCc -3'
miRNA:   3'- -GGGGGUCCG--------------AGGUau---GGUCCCUAuGG- -5'
33541 3' -56.7 NC_007605.1 + 55914 0.77 0.366686
Target:  5'- cUCCUCAacucGCUCCAgggGCCAgGGGAUACCg -3'
miRNA:   3'- -GGGGGUc---CGAGGUa--UGGU-CCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 39417 0.76 0.388399
Target:  5'- cCCCCCuugauGGCUCCG-ACCGGacugucuggggagaGGGUGCCg -3'
miRNA:   3'- -GGGGGu----CCGAGGUaUGGUC--------------CCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 68064 0.76 0.424672
Target:  5'- cCCCCCGGGCUgaUgGUGCUugccGGAUGCCa -3'
miRNA:   3'- -GGGGGUCCGA--GgUAUGGuc--CCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 130878 0.74 0.516177
Target:  5'- aCCUCUAGGCUCCAcccACUAGGuAUAUCg -3'
miRNA:   3'- -GGGGGUCCGAGGUa--UGGUCCcUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 28062 0.74 0.516177
Target:  5'- aCCUCUAGGCUCCAcccACUAGGuAUAUCg -3'
miRNA:   3'- -GGGGGUCCGAGGUa--UGGUCCcUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 47593 0.74 0.525787
Target:  5'- uUCUCCAGGCUCCuggAUCuGGGGcugGCCu -3'
miRNA:   3'- -GGGGGUCCGAGGua-UGGuCCCUa--UGG- -5'
33541 3' -56.7 NC_007605.1 + 141696 0.73 0.574733
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 123300 0.73 0.58168
Target:  5'- gCCCCCGGGcCUCUuggaaugcagcugggGCCAGGGGagucggcagguUACCc -3'
miRNA:   3'- -GGGGGUCC-GAGGua-------------UGGUCCCU-----------AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.