miRNA display CGI


Results 21 - 40 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33541 3' -56.7 NC_007605.1 + 137135 0.66 0.910088
Target:  5'- gCCgCCCGGGCU----GCCGGGGucccuCCg -3'
miRNA:   3'- -GG-GGGUCCGAgguaUGGUCCCuau--GG- -5'
33541 3' -56.7 NC_007605.1 + 140778 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 143273 0.66 0.910088
Target:  5'- gCCgCCCGGGCU----GCCGGGGucccuCCg -3'
miRNA:   3'- -GG-GGGUCCGAgguaUGGUCCCuau--GG- -5'
33541 3' -56.7 NC_007605.1 + 53182 0.66 0.910088
Target:  5'- gCCCgCCgggucgGGGCUCCAUugCcccauccaguuGGuGGUGCCg -3'
miRNA:   3'- -GGG-GG------UCCGAGGUAugGu----------CC-CUAUGG- -5'
33541 3' -56.7 NC_007605.1 + 35129 0.66 0.910088
Target:  5'- aCCCCAGuC-CCGU-CCAGGGGggACUu -3'
miRNA:   3'- gGGGGUCcGaGGUAuGGUCCCUa-UGG- -5'
33541 3' -56.7 NC_007605.1 + 16716 0.66 0.910088
Target:  5'- aCCCCAGuC-CCGU-CCAGGGGggACUu -3'
miRNA:   3'- gGGGGUCcGaGGUAuGGUCCCUa-UGG- -5'
33541 3' -56.7 NC_007605.1 + 141084 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 141492 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142918 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 141594 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142001 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 141797 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 141390 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142307 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142613 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142205 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142511 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142816 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 142409 0.66 0.910088
Target:  5'- gCCCC--GCUCCG-GCgGGGGGUgGCCg -3'
miRNA:   3'- gGGGGucCGAGGUaUGgUCCCUA-UGG- -5'
33541 3' -56.7 NC_007605.1 + 19785 0.66 0.910088
Target:  5'- aCCCCAGuC-CCGU-CCAGGGGggACUu -3'
miRNA:   3'- gGGGGUCcGaGGUAuGGUCCCUa-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.