miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33541 5' -62.4 NC_007605.1 + 130874 0.66 0.710873
Target:  5'- aCCua-CCUCUAGGCUCCAcccacuagguaUAUCGGGGc -3'
miRNA:   3'- -GGcggGGGGGUCCGAGGU-----------AUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 28058 0.66 0.710873
Target:  5'- aCCua-CCUCUAGGCUCCAcccacuagguaUAUCGGGGc -3'
miRNA:   3'- -GGcggGGGGGUCCGAGGU-----------AUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 51422 0.66 0.710873
Target:  5'- cCCGUCCCCgcugaCCAG--UCCGUGCCccacccuuGGGGg -3'
miRNA:   3'- -GGCGGGGG-----GGUCcgAGGUAUGG--------UCCC- -5'
33541 5' -62.4 NC_007605.1 + 34507 0.66 0.710873
Target:  5'- gUGUCCUCCCGGGgUCCAgaguucccggcUGCUcccgccucAGGGa -3'
miRNA:   3'- gGCGGGGGGGUCCgAGGU-----------AUGG--------UCCC- -5'
33541 5' -62.4 NC_007605.1 + 115231 0.66 0.710873
Target:  5'- gCCGCCUuCCCCAccGGCgcugCCccggauguUGCUGGGGu -3'
miRNA:   3'- -GGCGGG-GGGGU--CCGa---GGu-------AUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 71537 0.66 0.709933
Target:  5'- uCUGCCCCCCUcuGCUCCcuguuaaacauauAUAaugaccUCAGGGc -3'
miRNA:   3'- -GGCGGGGGGGucCGAGG-------------UAU------GGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 169966 0.66 0.701447
Target:  5'- -aGgCCCCCCAGGaaagaCCc--CCGGGGg -3'
miRNA:   3'- ggCgGGGGGGUCCga---GGuauGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 171026 0.66 0.701447
Target:  5'- -aGgCCCCCCAGGaaagaCCc--CCGGGGg -3'
miRNA:   3'- ggCgGGGGGGUCCga---GGuauGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 110408 0.66 0.701447
Target:  5'- -aGCCCCCCCua-CUCCccggcgAgCAGGGa -3'
miRNA:   3'- ggCGGGGGGGuccGAGGua----UgGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 51246 0.66 0.701447
Target:  5'- -aGCCaguCCCUGGGC-CU--GCCAGGGg -3'
miRNA:   3'- ggCGGg--GGGGUCCGaGGuaUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 143116 0.66 0.701447
Target:  5'- uCCGCUgCCCC--GCUCCGg--CGGGGa -3'
miRNA:   3'- -GGCGGgGGGGucCGAGGUaugGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 17171 0.66 0.701447
Target:  5'- cCUGCCCaugCCCUcGGcCUCUGaccgggacggcUACCAGGGg -3'
miRNA:   3'- -GGCGGG---GGGGuCC-GAGGU-----------AUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 15663 0.66 0.701447
Target:  5'- -aGCCCCCCCuGuGCUUC-UACCAa-- -3'
miRNA:   3'- ggCGGGGGGGuC-CGAGGuAUGGUccc -5'
33541 5' -62.4 NC_007605.1 + 171564 0.66 0.701447
Target:  5'- -aGgCCCCCCAGGaaagaCCc--CCGGGGg -3'
miRNA:   3'- ggCgGGGGGGUCCga---GGuauGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 151714 0.66 0.691969
Target:  5'- gUGCaaucaaaCCCCAGGCUCCcgGCCucacccAGGa -3'
miRNA:   3'- gGCGgg-----GGGGUCCGAGGuaUGG------UCCc -5'
33541 5' -62.4 NC_007605.1 + 50235 0.66 0.691969
Target:  5'- gCGCaCCUCgggccgcgcgCCAGGCUCCGaGCCggaaugcauuGGGGg -3'
miRNA:   3'- gGCG-GGGG----------GGUCCGAGGUaUGG----------UCCC- -5'
33541 5' -62.4 NC_007605.1 + 94133 0.66 0.691969
Target:  5'- aCGUCgCCCCAGGCccCCAgugGCCAa-- -3'
miRNA:   3'- gGCGGgGGGGUCCGa-GGUa--UGGUccc -5'
33541 5' -62.4 NC_007605.1 + 20567 0.66 0.682448
Target:  5'- uCCGCCCCCuCCaAGGaCUCgGgcCCAGu- -3'
miRNA:   3'- -GGCGGGGG-GG-UCC-GAGgUauGGUCcc -5'
33541 5' -62.4 NC_007605.1 + 29774 0.66 0.682448
Target:  5'- uCCGCCCCCuCCaAGGaCUCgGgcCCAGu- -3'
miRNA:   3'- -GGCGGGGG-GG-UCC-GAGgUauGGUCcc -5'
33541 5' -62.4 NC_007605.1 + 32843 0.66 0.682448
Target:  5'- uCCGCCCCCuCCaAGGaCUCgGgcCCAGu- -3'
miRNA:   3'- -GGCGGGGG-GG-UCC-GAGgUauGGUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.