miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33541 5' -62.4 NC_007605.1 + 88366 1.11 0.00071
Target:  5'- gCCGCCCCCCCAGGCUCCAUACCAGGGa -3'
miRNA:   3'- -GGCGGGGGGGUCCGAGGUAUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 88327 1.03 0.002629
Target:  5'- gCCGgCCCCCCAGGCUCCAUACCAGGGa -3'
miRNA:   3'- -GGCgGGGGGGUCCGAGGUAUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 88280 0.9 0.022303
Target:  5'- gCUGCucaaccagCUCCCCAGGCUCCAUACCAGGGa -3'
miRNA:   3'- -GGCG--------GGGGGGUCCGAGGUAUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 86375 0.82 0.08017
Target:  5'- gCGCCCCCCgAGGC-CUcUGCCGGGGa -3'
miRNA:   3'- gGCGGGGGGgUCCGaGGuAUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 86435 0.82 0.08017
Target:  5'- gCGCCCCCCgAGGC-CUcUGCCGGGGa -3'
miRNA:   3'- gGCGGGGGGgUCCGaGGuAUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 214 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 752 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 1274 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 1812 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 140821 0.76 0.193107
Target:  5'- gCGCCUCCUCGGGg-CCAgcUGCCGGGGg -3'
miRNA:   3'- gGCGGGGGGGUCCgaGGU--AUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 143890 0.76 0.193107
Target:  5'- gCGCCUCCUCGGGg-CCAgcUGCCGGGGg -3'
miRNA:   3'- gGCGGGGGGGUCCgaGGU--AUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 137752 0.76 0.193107
Target:  5'- gCGCCUCCUCGGGg-CCAgcUGCCGGGGg -3'
miRNA:   3'- gGCGGGGGGGUCCgaGGU--AUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 13051 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5'
33541 5' -62.4 NC_007605.1 + 16120 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5'
33541 5' -62.4 NC_007605.1 + 19189 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5'
33541 5' -62.4 NC_007605.1 + 22258 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5'
33541 5' -62.4 NC_007605.1 + 25327 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5'
33541 5' -62.4 NC_007605.1 + 28396 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5'
33541 5' -62.4 NC_007605.1 + 31465 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5'
33541 5' -62.4 NC_007605.1 + 34534 0.76 0.193107
Target:  5'- cUCGCCCCuucCCCGGGCUUCAgagcCCAGGa -3'
miRNA:   3'- -GGCGGGG---GGGUCCGAGGUau--GGUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.