miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33541 5' -62.4 NC_007605.1 + 59 0.71 0.415309
Target:  5'- aUGCCCCCCgGGGgUCUuu-CCuGGGg -3'
miRNA:   3'- gGCGGGGGGgUCCgAGGuauGGuCCC- -5'
33541 5' -62.4 NC_007605.1 + 214 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 483 0.71 0.375493
Target:  5'- gCCGCCCgCCCGccguagcgccGCUCUGUGCgGGGGg -3'
miRNA:   3'- -GGCGGGgGGGUc---------CGAGGUAUGgUCCC- -5'
33541 5' -62.4 NC_007605.1 + 597 0.71 0.415309
Target:  5'- aUGCCCCCCgGGGgUCUuu-CCuGGGg -3'
miRNA:   3'- gGCGGGGGGgUCCgAGGuauGGuCCC- -5'
33541 5' -62.4 NC_007605.1 + 719 0.66 0.682448
Target:  5'- uUCGUCCUCU--GGCUCUcuucGCCAGGGg -3'
miRNA:   3'- -GGCGGGGGGguCCGAGGua--UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 752 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 1020 0.71 0.375493
Target:  5'- gCCGCCCgCCCGccguagcgccGCUCUGUGCgGGGGg -3'
miRNA:   3'- -GGCGGGgGGGUc---------CGAGGUAUGgUCCC- -5'
33541 5' -62.4 NC_007605.1 + 1081 0.66 0.676717
Target:  5'- aCGCCCCCuccacuuuuuCCAGGaaugcgcggccccCCAUGCCccacGGGGg -3'
miRNA:   3'- gGCGGGGG----------GGUCCga-----------GGUAUGG----UCCC- -5'
33541 5' -62.4 NC_007605.1 + 1274 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 1543 0.71 0.375493
Target:  5'- gCCGCCCgCCCGccguagcgccGCUCUGUGCgGGGGg -3'
miRNA:   3'- -GGCGGGgGGGUc---------CGAGGUAUGgUCCC- -5'
33541 5' -62.4 NC_007605.1 + 1657 0.71 0.415309
Target:  5'- aUGCCCCCCgGGGgUCUuu-CCuGGGg -3'
miRNA:   3'- gGCGGGGGGgUCCgAGGuauGGuCCC- -5'
33541 5' -62.4 NC_007605.1 + 1812 0.79 0.122293
Target:  5'- cCCGCCCCCCUuggGGGCUUgGcuggcgcgGCCGGGGg -3'
miRNA:   3'- -GGCGGGGGGG---UCCGAGgUa-------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 2080 0.71 0.375493
Target:  5'- gCCGCCCgCCCGccguagcgccGCUCUGUGCgGGGGg -3'
miRNA:   3'- -GGCGGGgGGGUc---------CGAGGUAUGgUCCC- -5'
33541 5' -62.4 NC_007605.1 + 2673 0.69 0.50211
Target:  5'- aCCGCCaccggCCCCGGaGCag-AUGCCAGGGc -3'
miRNA:   3'- -GGCGGg----GGGGUC-CGaggUAUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 3059 0.72 0.336196
Target:  5'- gCGCgCCCCCCGGGCcCCAgUGCUgugaucgagcaucuGGGGu -3'
miRNA:   3'- gGCG-GGGGGGUCCGaGGU-AUGG--------------UCCC- -5'
33541 5' -62.4 NC_007605.1 + 7831 0.67 0.605545
Target:  5'- -gGCCCUCUguGGCgag--ACCAGGGa -3'
miRNA:   3'- ggCGGGGGGguCCGagguaUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 7878 0.71 0.375493
Target:  5'- gCGCCCUaCCgAGggaaaGCUCCAaGCCGGGGg -3'
miRNA:   3'- gGCGGGG-GGgUC-----CGAGGUaUGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 9699 0.66 0.65369
Target:  5'- gCCGCCCUCCagaacaGCUUCAucaaguccacUACCAGGa -3'
miRNA:   3'- -GGCGGGGGGguc---CGAGGU----------AUGGUCCc -5'
33541 5' -62.4 NC_007605.1 + 10348 0.68 0.576816
Target:  5'- -gGCCCCCggggCUGGGCUgCGcaagcagGCCGGGGg -3'
miRNA:   3'- ggCGGGGG----GGUCCGAgGUa------UGGUCCC- -5'
33541 5' -62.4 NC_007605.1 + 12645 0.67 0.622868
Target:  5'- -aGCCCCCCagacagaccccaGGGuCUCCAgg-CAGGGu -3'
miRNA:   3'- ggCGGGGGGg-----------UCC-GAGGUaugGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.