miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33551 3' -51.3 NC_007605.1 + 50156 0.66 0.996002
Target:  5'- gCAGCuggGAgGCGgcGGAUGGGGGUGCUu -3'
miRNA:   3'- aGUUGua-CU-UGCa-CCUGCUCUCGCGG- -5'
33551 3' -51.3 NC_007605.1 + 79310 0.66 0.996002
Target:  5'- aCAGCAaggugcUGGGCGUGGACc---GCGCg -3'
miRNA:   3'- aGUUGU------ACUUGCACCUGcucuCGCGg -5'
33551 3' -51.3 NC_007605.1 + 171370 0.66 0.995939
Target:  5'- -uGACAggGGGCGgGGACaGAGAggcggucGCGCCc -3'
miRNA:   3'- agUUGUa-CUUGCaCCUG-CUCU-------CGCGG- -5'
33551 3' -51.3 NC_007605.1 + 170832 0.66 0.995939
Target:  5'- -uGACAggGGGCGgGGACaGAGAggcggucGCGCCc -3'
miRNA:   3'- agUUGUa-CUUGCaCCUG-CUCU-------CGCGG- -5'
33551 3' -51.3 NC_007605.1 + 170310 0.66 0.995939
Target:  5'- -uGACAggGGGCGgGGACaGAGAggcggucGCGCCc -3'
miRNA:   3'- agUUGUa-CUUGCaCCUG-CUCU-------CGCGG- -5'
33551 3' -51.3 NC_007605.1 + 169772 0.66 0.995939
Target:  5'- -uGACAggGGGCGgGGACaGAGAggcggucGCGCCc -3'
miRNA:   3'- agUUGUa-CUUGCaCCUG-CUCU-------CGCGG- -5'
33551 3' -51.3 NC_007605.1 + 169772 0.66 0.995336
Target:  5'- -gAGCGcgGAGCGUGGGucaGAGAGUaGCUc -3'
miRNA:   3'- agUUGUa-CUUGCACCUg--CUCUCG-CGG- -5'
33551 3' -51.3 NC_007605.1 + 135172 0.66 0.995336
Target:  5'- ---cCGUGAGCGguuaccgGGGCGcAGGGCcucuGCCg -3'
miRNA:   3'- aguuGUACUUGCa------CCUGC-UCUCG----CGG- -5'
33551 3' -51.3 NC_007605.1 + 61510 0.66 0.995336
Target:  5'- -aGACAUGGGCcugaccucGUGuGGCGAGAGU-CCg -3'
miRNA:   3'- agUUGUACUUG--------CAC-CUGCUCUCGcGG- -5'
33551 3' -51.3 NC_007605.1 + 37053 0.66 0.994583
Target:  5'- -aAGCAUGGGCGagGGGCGccccAGGGCaacaccgacGCCg -3'
miRNA:   3'- agUUGUACUUGCa-CCUGC----UCUCG---------CGG- -5'
33551 3' -51.3 NC_007605.1 + 127930 0.66 0.994583
Target:  5'- -gGACcugGAAUGUggGGAUGAGcuGCGCCu -3'
miRNA:   3'- agUUGua-CUUGCA--CCUGCUCu-CGCGG- -5'
33551 3' -51.3 NC_007605.1 + 108828 0.66 0.994583
Target:  5'- -uGGCA-GAG-GUGGACGGGGGgcuCGCCc -3'
miRNA:   3'- agUUGUaCUUgCACCUGCUCUC---GCGG- -5'
33551 3' -51.3 NC_007605.1 + 51720 0.66 0.994583
Target:  5'- aUCAGCcgGGaggaagaugGCGUGGuccACGAGcGGCGUg -3'
miRNA:   3'- -AGUUGuaCU---------UGCACC---UGCUC-UCGCGg -5'
33551 3' -51.3 NC_007605.1 + 158751 0.66 0.992782
Target:  5'- cUCAGagggGAGCG-GaGACcagGAGGGCGCCu -3'
miRNA:   3'- -AGUUgua-CUUGCaC-CUG---CUCUCGCGG- -5'
33551 3' -51.3 NC_007605.1 + 152614 0.66 0.992782
Target:  5'- cUCAGagggGAGCG-GaGACcagGAGGGCGCCu -3'
miRNA:   3'- -AGUUgua-CUUGCaC-CUG---CUCUCGCGG- -5'
33551 3' -51.3 NC_007605.1 + 143407 0.66 0.992782
Target:  5'- cUCAGagggGAGCG-GaGACcagGAGGGCGCCu -3'
miRNA:   3'- -AGUUgua-CUUGCaC-CUG---CUCUCGCGG- -5'
33551 3' -51.3 NC_007605.1 + 137269 0.66 0.992782
Target:  5'- cUCAGagggGAGCG-GaGACcagGAGGGCGCCu -3'
miRNA:   3'- -AGUUgua-CUUGCaC-CUG---CUCUCGCGG- -5'
33551 3' -51.3 NC_007605.1 + 146476 0.66 0.992782
Target:  5'- cUCAGagggGAGCG-GaGACcagGAGGGCGCCu -3'
miRNA:   3'- -AGUUgua-CUUGCaC-CUG---CUCUCGCGG- -5'
33551 3' -51.3 NC_007605.1 + 149545 0.66 0.992782
Target:  5'- cUCAGagggGAGCG-GaGACcagGAGGGCGCCu -3'
miRNA:   3'- -AGUUgua-CUUGCaC-CUG---CUCUCGCGG- -5'
33551 3' -51.3 NC_007605.1 + 115245 0.66 0.992782
Target:  5'- --cACGUGGACGUccccuugguccuGGACGAcGAaagcuggaaGCGCCu -3'
miRNA:   3'- aguUGUACUUGCA------------CCUGCU-CU---------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.